Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00921 ATGGCGACGATTACCAATGCGACGGCGATGAGCGGTGCATGTCCGGCGGCCATGAAAGCCACTTCAGACGGTGTTTTCCAAGGCGATAATCCTCTCGATTTTGCCCTCCCTCTTGCTATCCTTCAGATTTGTCTTGTCGTCCTTCTCACTCGCCTTCTTTCTTTCCTTCTTCGTCCTATTCGTCAGCCTCGTGTTATTGCTGAGATCGTCGGCGGAATCTTGCTGGGTCCATCGGCACTTGGGCGGAACTTGAAATACTTACACACAATTTTCCCAGCGAGGAGTCTCACCGTATTGGACACATTGGCCAATTTGGGTCTTCTCTTCTTCCTGTTTCTCGTCGGCTTGGAGTTGGACCCTAAATCCCTCCGCCGCACCGGAAAACGAGCCATGTGCATTGCCTTTGCTGGGATCACCTTCCCCTTCGTTCTCGGAATCGGCACCTCTTTCATCCTCCGATCAACCATCTCCAAAGGCGTTAATGAAGCTGCATTGCTCGTTTTTATGGGTGTTGCTCTTTCCATCACTGCCTTTCCTGTTCTCGCTCGAATTTTGGCTGAGCTCAAGCTTTTGACAACGGACGTTGGCCGAATGGCTATGTCTGCCGCTGCCGTTAATGACGTCGCAGCCTGGATCCTTCTCGCCTTGGCAATTGCACTCTCTGGCACCGGAAACTCCCCTCTTGTTTCCCTCTGGGTTTTCCTCTCTGGCGCTGGTTTTATCCTGTTTTGTACCTTCTCTATTCCGCCGTTGTTCCGATGGATGTCACAACGGTGCTCTGAGGGCGAACCAGTGAAGGAATTGTACATTTGTGCCACTCTTTCCATTGTTTTGGCTGCTGGGTTCATGACTGATTTGATCGGAATCCATGCCCTGTTTGGAGCTTTTGTCGTTGGAGTTTTGATTCCGAAAGAAGGCCCATTCGCCGGAGCTCTGGTTGAGAAAGTTGAAGATCTCGTCTCCGGTTTGTTCCTTCCTTTATACTTCGTTTCCAGTGGATTGAAAACAAACGTTGCAACAATTAAAGGAGCTAAATCATGGGCTCTTCTCGTTTTAGTTATTTTCAATGCTTGTTTCGGTAAAATCGTTGGAACAGTCTCTGTTTCACTGGCCTGCAAAATGCCATTGAAAGAATCACTTGCTTTAGGGTTCTTAATGAACACGAAAGGCTTGGTGGAATTGATCGTTCTGAACATCGGCAAAGACAGGAAGGTTTTGAATGATCAAACGTTTGCAATTATGGTTCTAATGGCAATCTTCACAACATTCATGACAACCCCAATTGTTCTGGCCGTTTACAAACCGGCGAAAAAACAAAGCAAATCTATTTACCAGCACAGGAAACTAGAGAGGGAAAATCTCAATTCTGAGCTCCGGATTCTGGCTTGTTTCCACTCCTTCGGAAACATTCCGGCGACGATTAATCTTATTGAAGCTTCTCGAGGGATTGAAAAGAAAGAAGGGCTCTGTGTTTATGCTCTGCATTTAATGGAGCTAACAGAGAGATCCTCTGCCATTCTTATGGTTCACAAAGCAAGGAAAAACGGCGTCCCCTTTTGGAACAAAGGCCGTGTTGATTCGAACCAGATCGTCGTCGCCTTCGAGGCATTCCGGCAACTCAGCAGGGTTTCAATCCGGCCGATGACTGCCATTTCTGCTCTGTCCAACATGCACGAAGATATCTGCAGTAGCGCCGAGACGAAAAGGGCGGCCATTATAATTCTCCCGTTTCACAAACACCAAAGATTGGACGGATCTCTTGAAACGACGAGGACTGATTACCGTTCGGTCAATCGGAAAGTTCTGGAACAAGCCCCCTGCTCCGTCGCAATTTTGATCGACAGAGGACTCGGCGGTGGGTCCCACGTCAACGCAAGTAACGTCTCCTCCACAATCACCGTCTTCTTCTTCGGTGGGCATGACGACCGTGAAGCTCTGGCGTTCGGGAAAAGAATGGCGGAACATCCGGGAATCAGCCTGCAGGTCGTCCGATTCACACCCAGTGCCGATTTCGCTGTGGAATCCGTCGCCATCGACATAAACAAGAAGAATACGGCGGATTCCGACGGTGATGAAAAAGCACTGGAGTCTATTACGTATGAAGAGAGGAACGTGAGTAAAGGAAGCCACGCCGTTGAAGCGATGAAGGAATTCAATAAATCCAATTTGATTTTGGTCGGAAGAATGCCGGAGGGAGAAGTGGTGAGGAGTTTGAATGCGAACGGTGGGGAAGGTTCGGAGCTTGGGCCCGTTGGCGCAGTGTTGGCATTGCCGGAGTTTTCAACGACGGCGTCGGTGCTGGTGGTGCAGCAATTTCGTGGTGAACAGTCACAGTTGCCGGTGGATTCGACTTTCGGTGGGGAATTGACTGAAAAATAG 2379 49.14 MATITNATAMSGACPAAMKATSDGVFQGDNPLDFALPLAILQICLVVLLTRLLSFLLRPIRQPRVIAEIVGGILLGPSALGRNLKYLHTIFPARSLTVLDTLANLGLLFFLFLVGLELDPKSLRRTGKRAMCIAFAGITFPFVLGIGTSFILRSTISKGVNEAALLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVSLWVFLSGAGFILFCTFSIPPLFRWMSQRCSEGEPVKELYICATLSIVLAAGFMTDLIGIHALFGAFVVGVLIPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIKGAKSWALLVLVIFNACFGKIVGTVSVSLACKMPLKESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFMTTPIVLAVYKPAKKQSKSIYQHRKLERENLNSELRILACFHSFGNIPATINLIEASRGIEKKEGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKGRVDSNQIVVAFEAFRQLSRVSIRPMTAISALSNMHEDICSSAETKRAAIIILPFHKHQRLDGSLETTRTDYRSVNRKVLEQAPCSVAILIDRGLGGGSHVNASNVSSTITVFFFGGHDDREALAFGKRMAEHPGISLQVVRFTPSADFAVESVAIDINKKNTADSDGDEKALESITYEERNVSKGSHAVEAMKEFNKSNLILVGRMPEGEVVRSLNANGGEGSELGPVGAVLALPEFSTTASVLVVQQFRGEQSQLPVDSTFGGELTEK 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10837487 10840669 - Lsi07G009210.1 Lsi07g00921 667343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00921 792 Pfam Sodium/hydrogen exchanger family 44 429 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi07g00921 792 PANTHER CATION/H(+) ANTIPORTER 17 13 779 - -
Lsi07g00921 792 Gene3D - 485 769 - -
Lsi07g00921 792 Gene3D - 38 443 IPR038770 -
Lsi07g00921 792 PANTHER CATION/H + ANTIPORTER 13 779 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01409 Lsi-Chr1:12218458 Lsi07g00921 Lsi-Chr7:10837487 0 dispersed
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00923 Lsi-Chr7:10948797 0 dispersed
Lsi07g00919 Lsi-Chr7:10797643 Lsi07g00921 Lsi-Chr7:10837487 0 proximal
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00922 Lsi-Chr7:10893709 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00921 - - csv:101202937 1355.5