Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00921 ATGGCGACGATTACCAATGCGACGGCGATGAGCGGTGCATGTCCGGCGGCCATGAAAGCCACTTCAGACGGTGTTTTCCAAGGCGATAATCCTCTCGATTTTGCCCTCCCTCTTGCTATCCTTCAGATTTGTCTTGTCGTCCTTCTCACTCGCCTTCTTTCTTTCCTTCTTCGTCCTATTCGTCAGCCTCGTGTTATTGCTGAGATCGTCGGCGGAATCTTGCTGGGTCCATCGGCACTTGGGCGGAACTTGAAATACTTACACACAATTTTCCCAGCGAGGAGTCTCACCGTATTGGACACATTGGCCAATTTGGGTCTTCTCTTCTTCCTGTTTCTCGTCGGCTTGGAGTTGGACCCTAAATCCCTCCGCCGCACCGGAAAACGAGCCATGTGCATTGCCTTTGCTGGGATCACCTTCCCCTTCGTTCTCGGAATCGGCACCTCTTTCATCCTCCGATCAACCATCTCCAAAGGCGTTAATGAAGCTGCATTGCTCGTTTTTATGGGTGTTGCTCTTTCCATCACTGCCTTTCCTGTTCTCGCTCGAATTTTGGCTGAGCTCAAGCTTTTGACAACGGACGTTGGCCGAATGGCTATGTCTGCCGCTGCCGTTAATGACGTCGCAGCCTGGATCCTTCTCGCCTTGGCAATTGCACTCTCTGGCACCGGAAACTCCCCTCTTGTTTCCCTCTGGGTTTTCCTCTCTGGCGCTGGTTTTATCCTGTTTTGTACCTTCTCTATTCCGCCGTTGTTCCGATGGATGTCACAACGGTGCTCTGAGGGCGAACCAGTGAAGGAATTGTACATTTGTGCCACTCTTTCCATTGTTTTGGCTGCTGGGTTCATGACTGATTTGATCGGAATCCATGCCCTGTTTGGAGCTTTTGTCGTTGGAGTTTTGATTCCGAAAGAAGGCCCATTCGCCGGAGCTCTGGTTGAGAAAGTTGAAGATCTCGTCTCCGGTTTGTTCCTTCCTTTATACTTCGTTTCCAGTGGATTGAAAACAAACGTTGCAACAATTAAAGGAGCTAAATCATGGGCTCTTCTCGTTTTAGTTATTTTCAATGCTTGTTTCGGTAAAATCGTTGGAACAGTCTCTGTTTCACTGGCCTGCAAAATGCCATTGAAAGAATCACTTGCTTTAGGGTTCTTAATGAACACGAAAGGCTTGGTGGAATTGATCGTTCTGAACATCGGCAAAGACAGGAAGGTTTTGAATGATCAAACGTTTGCAATTATGGTTCTAATGGCAATCTTCACAACATTCATGACAACCCCAATTGTTCTGGCCGTTTACAAACCGGCGAAAAAACAAAGCAAATCTATTTACCAGCACAGGAAACTAGAGAGGGAAAATCTCAATTCTGAGCTCCGGATTCTGGCTTGTTTCCACTCCTTCGGAAACATTCCGGCGACGATTAATCTTATTGAAGCTTCTCGAGGGATTGAAAAGAAAGAAGGGCTCTGTGTTTATGCTCTGCATTTAATGGAGCTAACAGAGAGATCCTCTGCCATTCTTATGGTTCACAAAGCAAGGAAAAACGGCGTCCCCTTTTGGAACAAAGGCCGTGTTGATTCGAACCAGATCGTCGTCGCCTTCGAGGCATTCCGGCAACTCAGCAGGGTTTCAATCCGGCCGATGACTGCCATTTCTGCTCTGTCCAACATGCACGAAGATATCTGCAGTAGCGCCGAGACGAAAAGGGCGGCCATTATAATTCTCCCGTTTCACAAACACCAAAGATTGGACGGATCTCTTGAAACGACGAGGACTGATTACCGTTCGGTCAATCGGAAAGTTCTGGAACAAGCCCCCTGCTCCGTCGCAATTTTGATCGACAGAGGACTCGGCGGTGGGTCCCACGTCAACGCAAGTAACGTCTCCTCCACAATCACCGTCTTCTTCTTCGGTGGGCATGACGACCGTGAAGCTCTGGCGTTCGGGAAAAGAATGGCGGAACATCCGGGAATCAGCCTGCAGGTCGTCCGATTCACACCCAGTGCCGATTTCGCTGTGGAATCCGTCGCCATCGACATAAACAAGAAGAATACGGCGGATTCCGACGGTGATGAAAAAGCACTGGAGTCTATTACGTATGAAGAGAGGAACGTGAGTAAAGGAAGCCACGCCGTTGAAGCGATGAAGGAATTCAATAAATCCAATTTGATTTTGGTCGGAAGAATGCCGGAGGGAGAAGTGGTGAGGAGTTTGAATGCGAACGGTGGGGAAGGTTCGGAGCTTGGGCCCGTTGGCGCAGTGTTGGCATTGCCGGAGTTTTCAACGACGGCGTCGGTGCTGGTGGTGCAGCAATTTCGTGGTGAACAGTCACAGTTGCCGGTGGATTCGACTTTCGGTGGGGAATTGACTGAAAAATAG 2379 49.14 MATITNATAMSGACPAAMKATSDGVFQGDNPLDFALPLAILQICLVVLLTRLLSFLLRPIRQPRVIAEIVGGILLGPSALGRNLKYLHTIFPARSLTVLDTLANLGLLFFLFLVGLELDPKSLRRTGKRAMCIAFAGITFPFVLGIGTSFILRSTISKGVNEAALLVFMGVALSITAFPVLARILAELKLLTTDVGRMAMSAAAVNDVAAWILLALAIALSGTGNSPLVSLWVFLSGAGFILFCTFSIPPLFRWMSQRCSEGEPVKELYICATLSIVLAAGFMTDLIGIHALFGAFVVGVLIPKEGPFAGALVEKVEDLVSGLFLPLYFVSSGLKTNVATIKGAKSWALLVLVIFNACFGKIVGTVSVSLACKMPLKESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAIMVLMAIFTTFMTTPIVLAVYKPAKKQSKSIYQHRKLERENLNSELRILACFHSFGNIPATINLIEASRGIEKKEGLCVYALHLMELTERSSAILMVHKARKNGVPFWNKGRVDSNQIVVAFEAFRQLSRVSIRPMTAISALSNMHEDICSSAETKRAAIIILPFHKHQRLDGSLETTRTDYRSVNRKVLEQAPCSVAILIDRGLGGGSHVNASNVSSTITVFFFGGHDDREALAFGKRMAEHPGISLQVVRFTPSADFAVESVAIDINKKNTADSDGDEKALESITYEERNVSKGSHAVEAMKEFNKSNLILVGRMPEGEVVRSLNANGGEGSELGPVGAVLALPEFSTTASVLVVQQFRGEQSQLPVDSTFGGELTEK 792
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10837487 10840669 - Lsi07G009210.1 Lsi07g00921 667343

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00921 792 Pfam Sodium/hydrogen exchanger family 44 429 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi07g00921 792 PANTHER CATION/H(+) ANTIPORTER 17 13 779 - -
Lsi07g00921 792 Gene3D - 485 769 - -
Lsi07g00921 792 Gene3D - 38 443 IPR038770 -
Lsi07g00921 792 PANTHER CATION/H + ANTIPORTER 13 779 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00921 - - - csv:101202937 1355.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01409 Lsi-Chr1:12218458 Lsi07g00921 Lsi-Chr7:10837487 0 dispersed
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00923 Lsi-Chr7:10948797 0 dispersed
Lsi07g00919 Lsi-Chr7:10797643 Lsi07g00921 Lsi-Chr7:10837487 0 proximal
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00922 Lsi-Chr7:10893709 0 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi10g00730 . 11 795 Antiporter Super Family AT2G13620 73.3 0.0e+00 1157.5
Lsi07g00921 . 1 775 Antiporter Super Family AT1G64170 58.2 2.7e-238 822.0
Lsi07g00919 . 15 784 Antiporter Super Family AT1G64170 56.7 1.4e-231 799.7
Lsi07g00923 . 8 783 Antiporter Super Family AT1G64170 54.5 7.6e-225 777.3
Lsi07g00922 . 1 829 Antiporter Super Family AT1G64170 50.9 2.3e-221 765.8
Lsi07g00921 . 14 772 Antiporter Super Family AT4G23700 67.9 6.0e-294 1006.9
Lsi07g00919 . 9 796 Antiporter Super Family AT4G23700 62.6 3.5e-278 954.5
Lsi07g00923 . 11 781 Antiporter Super Family AT4G23700 62.1 1.2e-275 946.0
Lsi07g00922 . 13 846 Antiporter Super Family AT4G23700 56.6 2.7e-262 901.7
Lsi07g00919 . 1 779 Antiporter Super Family AT5G41610 70.1 5.0e-309 1057.0
Lsi07g00921 . 7 774 Antiporter Super Family AT5G41610 68.5 6.5e-301 1030.0
Lsi07g00923 . 1 783 Antiporter Super Family AT5G41610 64.3 1.0e-285 979.5
Lsi07g00922 . 4 829 Antiporter Super Family AT5G41610 60.0 1.1e-276 949.5
Lsi07g00921 . 7 772 Antiporter Super Family AT3G17630 63.3 2.0e-270 928.7
Lsi07g00919 . 11 779 Antiporter Super Family AT3G17630 63.5 3.4e-270 927.9
Lsi07g00923 . 11 781 Antiporter Super Family AT3G17630 60.8 1.2e-259 892.9
Lsi07g00922 . 7 827 Antiporter Super Family AT3G17630 56.1 1.0e-250 863.2
Lsi01g01409 . 18 698 Antiporter Super Family AT3G17630 50.4 4.2e-167 585.5
Lsi01g01409 . 18 722 Antiporter Super Family AT3G53720 67.2 2.4e-265 911.8
Lsi07g00919 . 83 779 Antiporter Super Family AT3G53720 50.4 1.4e-183 640.2
Lsi07g00921 . 86 771 Antiporter Super Family AT3G53720 50.4 4.4e-182 635.2
Lsi02g02561 . 47 790 Antiporter Super Family AT3G52080 54.4 1.8e-234 809.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000528 2 8 3 3 2 4 4 4 4 4 4 4 4 3 3 4 4 5 2 4 4 2 2 3 4 4 2 5 5 5 111
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00921 Lsi_Chr07 FPKM 28.094728 31.133698 30.336311 32.397213 13.940397 12.960439 14.964034 27.262636 25.438398 28.475174