Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00922 ATGGATAAAATGGCGGGGAATACCACGGCGGCGGGTAGCTGTCCAGCGGCGATGAAAGCGACGTCCAACGGCGTGTTTCAAGGCGACAACCCGCTTGATTTCGCTCTCCCTTTAGCCATTCTTCAAATATGTTTAGTGGGAGGAATATTGTTGGGACCGTCGGCAGTGGGGCGGAGCCAAGAATTTCTTCACAGAGTGTTTCCGGCGAGAAGCCTACCGGTTTTGGACACATTGGCGAATTTGGGTCTTCTGTTCTTCCTATTTTTGGTGGGGTTGGAGTTAGATCTCAAATCCCTCCGCCGTACCGGAAAGGGTGCAATGGCCATAGCCGTGGCCGGAATCACCCTCCCTTTCATCCTCGGCATTGGAACCTCCTATGTCCTCCGTTCCACTATCTCCAAAGGCGTCCATGGCCCTCCTTTTCTCGTTTTCATGGGCGTAGCTCTCTCCATTACCGCTTTCCCTGTCCTTGCCCGCATTCTCGCCGAACTCAAGCTCTTAACCACCAACGTTGGCCGCATGGCCATGTCCGCCGCCGCCGTCAACGACATCGCCGCTTGGATCCTCCTCGCCCTTGCCATCGCCCTCTCCGGCACCGGCCGCTCCCCTCTCGTCTCCCTCTGGGTTTTCCTCTGCGGCTCTGCTTTTGTCCTGTTTTGTTTCTTTACCCTCCCGCCCATCTTCCATTGGATTTCCCGCCGCTGCTCCGATGGCGAGCCAGTAAGCGAACTCTACATTTGCGCCATTTTATCCACTGTCTTGGCCGCTGGATTCATCACCGACTTAATCGGAATCCACGCCCTTTTCGGCGCTTTCGTTGTCGGCGTCTTCGTCCCAAAAGACGGCCCACTCGCCGGAGCTCTAGTCGAGAAAGTGGAAGATCTTGTATCAGGTCTATTCCTCCCTCTCTATTTTGTATCAAGCGGATTAAAAACAAACATCGCCACAATCAAAGGAGCCCAATCATGGGGTCTCCTCGTTCTTGTGGTAATCACCGCTTGTTTTGGTAAAATTATCGGCACAATTTCTGTAGCACTCTTTTGCAAGATGCCACTCCAAGAATCAATTGCTTTGGGATTCTTAATGAACACCAAAGGACTAGTGGAATTAATCGTCTTAAACATCGGAAAAGACAGAAAAGTTTTAAATGACCAAACCTTCGCAATTTTAGTTCTAATGGCTATAATCACAACGTTCATCACAACCCCAATTGTAATGGCGGTTTACAAACCAGCAAAAAGAAAAAGCAAATCAGAATACACATACAGAACAATCGAGCGAGAAGAGGGCAATTCAGAGCTGAGGATTTTGGCTTGCTTTCACTCTGTTAATAACATTCCTTCGATTTTGAATCTGATAGAGGTTTCTCGTGGGAGAGAAGCTCGTGGACGGCGGGTTTGTGTGTATGCGATGCATTTGATGGAGCTGACGGAGAGGTCGTCGGCGATTGTAATGGTTCATCGAGCTAGAAAGAATGGATTGCCGTTTTGGAATAAAGGAGGGAAGTCAGATTCAGATCAAATTGTAGTGGCTTTTGAAGCTTTTGAGCAGCTTAGTCGAGTGTCAATACGTCCAATGACGGCCATTTCTGCCTTCTCAGATATGCATGAAGATGTCTGTAACAGTGCTGACAGAAAACGTGCCGCCATTATCATCCTCCCATTCCACAAACACCAAAGTCTATTTTATGAGAGTGGAGTCTTAATTTTTTTTAGGAAAACAAAAATCATTAAGAATTCACATGAGTTTGTGCAAAAAAAAAAAACATATAATGAAATTACGATTATTAACAAGAACTTTAAAAACCAAAACAAAACTAAAACCCACCATTATGTTTACAAGGTTGTTGACACGATTGGTAAAATATGGGCATGCAGGTTTGATGGATCTTTGGAGACAACACGAACTGATTTTCAATGGGTCAATCAAAAAGTTCTCGAACAACCACCATGCTCCGTTGGGATCTTAGTCGACCGAGGTCTTGGAGGTGGTTCACACATTTGTGCTAGCAACGTTTCTTCCATTATAACCGTCTTCTTCTTCGGCGGTCGTGACGATCGTGAAGCTTTAGCCTACGGTCGAAGAATGGTTGAACATCCAGGAATAACCCTAAACGTCATTCGTATCCTTTCCACTCCTGACATGACTACAGAATCAACAATAATTGACATAAATAAAGACGAAAGCAATCTTTCGACCATCATAGATCAGAAAGTGTTGATGGAGTTGAATGTGAAGAAAACAGAGGACGAATCAATTAGATATGAAGAAAGGAGAGTGAATAAATGCAATGACATAATTGAAGTAATAAGGGAATTCAGTAGATGCAATTTGATATTGGTGGGTCAAGCCCCTGAAGGTCAAGTAGTGGAAAGTCTTCATTTTAAAGGTGGTGAATGCCCGGAATTGGGTCCTATTGGCAACTTGTTGATATCATCGGAGCTCTCAATGGCAGCTTCAGTGTTGGTGGTGCAACAATTTCGTGGTCCATTGTTGTCTTCCTCATCCACATCTACAGCGATGGTATTGCCAGAAGAAGTTACCGAGTAA 2550 45.69 MDKMAGNTTAAGSCPAAMKATSNGVFQGDNPLDFALPLAILQICLVGGILLGPSAVGRSQEFLHRVFPARSLPVLDTLANLGLLFFLFLVGLELDLKSLRRTGKGAMAIAVAGITLPFILGIGTSYVLRSTISKGVHGPPFLVFMGVALSITAFPVLARILAELKLLTTNVGRMAMSAAAVNDIAAWILLALAIALSGTGRSPLVSLWVFLCGSAFVLFCFFTLPPIFHWISRRCSDGEPVSELYICAILSTVLAAGFITDLIGIHALFGAFVVGVFVPKDGPLAGALVEKVEDLVSGLFLPLYFVSSGLKTNIATIKGAQSWGLLVLVVITACFGKIIGTISVALFCKMPLQESIALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAIITTFITTPIVMAVYKPAKRKSKSEYTYRTIEREEGNSELRILACFHSVNNIPSILNLIEVSRGREARGRRVCVYAMHLMELTERSSAIVMVHRARKNGLPFWNKGGKSDSDQIVVAFEAFEQLSRVSIRPMTAISAFSDMHEDVCNSADRKRAAIIILPFHKHQSLFYESGVLIFFRKTKIIKNSHEFVQKKKTYNEITIINKNFKNQNKTKTHHYVYKVVDTIGKIWACRFDGSLETTRTDFQWVNQKVLEQPPCSVGILVDRGLGGGSHICASNVSSIITVFFFGGRDDREALAYGRRMVEHPGITLNVIRILSTPDMTTESTIIDINKDESNLSTIIDQKVLMELNVKKTEDESIRYEERRVNKCNDIIEVIREFSRCNLILVGQAPEGQVVESLHFKGGECPELGPIGNLLISSELSMAASVLVVQQFRGPLLSSSSTSTAMVLPEEVTE 849
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10893709 10901887 - Lsi07G009220.1 Lsi07g00922 667344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00922 849 Gene3D - 34 419 IPR038770 -
Lsi07g00922 849 PANTHER CATION/H(+) ANTIPORTER 17 13 561 - -
Lsi07g00922 849 PANTHER CATION/H(+) ANTIPORTER 17 625 835 - -
Lsi07g00922 849 Pfam Sodium/hydrogen exchanger family 44 404 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi07g00922 849 PANTHER CATION/H + ANTIPORTER 13 561 - -
Lsi07g00922 849 PANTHER CATION/H + ANTIPORTER 625 835 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00922 Lsi-Chr7:10893709 Lsi10g00730 Lsi-Chr10:10120813 2.08E-36 dispersed
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00922 Lsi-Chr7:10893709 0 tandem
Lsi07g00922 Lsi-Chr7:10893709 Lsi07g00923 Lsi-Chr7:10948797 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00922 - - csv:101203169 965.681