Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00923 ATGGCGTTGAATATGACTGCGGCAAGTGGGTGTCCGACAGAGATGAAAGCGACGTCCAACGGCGTGTTTCAAGGCGATAACCCACTTGATTTCGCTCTTCCTTTGGCCATTCTTCAGATATGTTTGGTGGTTGTTCTTACTCGTCTTCTTGGTTTGCTTCTCCGACCACTCAGAGAGCCTCGAGTCATTGCTGAGATCGTTGGTGGAATATTACTTGGACCATCAGCGATGGGTCGGAGCCAGGGATTTCTACAGAGAGTGTTCCCAGAAAAAAGCCTAACAGTGTTGGACACATTAGCTAATATGGGTCTTTTGTTCTTCCTTTTTCTGGTTGGACTTGAGTTAGATCCCAAGTCTCTCCGTCGTACCGGAAAGGGCGCAATGGGCATAGCCATGGCCGGAATTACTCTCCCTTTACTCCTCGGAATCGGAACCTCTTATGTCCTTCGTTCCACTATCTCCAAAGGCGTCCATGGCCCTTCCTTTCTCATCTTCATCGGCGTCTCTCTCTCCATTACCGCTTTTCCTGTTCTTGCTCGTATCCTAGCTGAACTCAAGCTCTTAACCACCAACCTCGGCCGCATTGCTATGTCCGCAGCTGCCGTCAATGACATCGCTGCCTGGATCCTCCTCGCCCTCGCCATTGCTCTCTCTGGCACTGGTCGTTCCCCTCTCGTCTCCCTCTGGGTTTTCCTCTGCGGCTCTGTTTTTGTCCTGTTTTGCTTTTTCACTCTTCCGCCGGCCTTCCATTGGATGTCCCGCCGTTGCTGCAAAGGCGAGCCTGTAAGCGAACTCTACATTTGCGCTACTTTATCCATTGTCTTGGCCGCTGGATTCATCACTGACTTAATCGGAATCCATGCTCTGTTTGGCGCTTTTGTCGTCGGCATCCTCGTCCCAAAGGACGGCCCACTCGCCGGAGCCCTCGTTGAAAAAGTCGAAGATCTTGTTTCCAGTCTATTCCTCCCTCTCTATTTCGTTTCAAGTGGATTGAAAACAAACATTACCACAATCCAAGGAGCACAATCATGGGGTCTACTCATTCTCGTAATTTTCACCGCGTGTTTTGGGAAAATCGTTGGCACTATCTTGATGGCACTCTTTTGCAAGATGCCATTCCAAGAATCTCTAGCTTTAGGATTCTTAATGAACACCAAAGGGCTTGTGGAATTGATTGTCTTAAACATCGGTAAAGACAGAAAAGTTTTGAATGACCAAACCTTTGCAATTCTAGTTCTAATGGCTGTCATCACAACCTTCTTCACCACCCCCATTGTCATGGCAGTTTACAAGCCGGCCAAGAGAAAGAGCAAATCTGAATACGCTTATAAGACAATTGAGCGTGATGACCCAAATACTGAGCTTCGAATTTTGGCTTGCTTTCACTCGGTTAATAACATTCCATCGATTCTGAATTTGATTGAGATAAGTCGTGGGATGGAGGGGAAAGAAGGTTGTAGTAGTAAGCTTTGTGTTTATGCAATGCATTTGATGGAGCTGACAGAGAGGTCGTCAGCCATTGTTATGGTCCACCGAGCTAGAAAAAATGGGCGACCATTTTGGAATAAAGGAGAGAAGTCAGGTTGTGACCAAATTGCTGTGGCTTTTAAGGCTTTTCAGCAGCTTAGTCGAGTGTCCATACGTCCAATGACTGCCATATCTCCGCTTTCTGATATGCATGAAGATGTCTGCAATAGAGCTGAGAGGAAACACACCGCTATTATCATTCTCCCATTCCACAAACACCAAAGGTTTGATATATTTGATGGATCTTTAGAGGCAACACGAGGTGATTTCCAATGGGTGAATCAAAAAGTTTTGGAACAATCACCATGTTCCGTTGGAATCCTGGTTGATAGAGGATTTGGAAGTGGGTCTCACATCTGCGCCACCAACATCTCTTCCACCATAACCATCTTCTTCTTCGGCGGTCGTGACGATCGTGAAGCTCTAGCCTTTGGTCGGAGAATAGCAGAGCATTCTAGAATAACCTTAAATATCGTCCGTTTCATTTTGAGCTCTAACATGAACCTAAAATCCACTACGGTTGATTCAACAGTCATGGATCAAAGGGCGTTGATGGAGTTCAATGGGAAAAAAACAAACGACAAGTCAATTAGGTATGAAGAGAGGGTAGTAAGTACATTCAACGATGCTATTGAAGTAATAAGGGAGTTCAGCAGATGCAATTTGATATTGGTGGGTCAAACGCCAGAAGCGCAAGTAGTGGAGAGTCTTCATTTCAAGATCAATGTCGAATGCCCAGAGTTAGGTCCCGTCGGCAGCTTGTTGACATCAATGGAGCTATCAATCGCAGCTTCAATTTTGGTGGTACAACAGTTTCGTGGTCCATTGTTGTCTTCCTCATTCATGTGA 2376 46.04 MALNMTAASGCPTEMKATSNGVFQGDNPLDFALPLAILQICLVVVLTRLLGLLLRPLREPRVIAEIVGGILLGPSAMGRSQGFLQRVFPEKSLTVLDTLANMGLLFFLFLVGLELDPKSLRRTGKGAMGIAMAGITLPLLLGIGTSYVLRSTISKGVHGPSFLIFIGVSLSITAFPVLARILAELKLLTTNLGRIAMSAAAVNDIAAWILLALAIALSGTGRSPLVSLWVFLCGSVFVLFCFFTLPPAFHWMSRRCCKGEPVSELYICATLSIVLAAGFITDLIGIHALFGAFVVGILVPKDGPLAGALVEKVEDLVSSLFLPLYFVSSGLKTNITTIQGAQSWGLLILVIFTACFGKIVGTILMALFCKMPFQESLALGFLMNTKGLVELIVLNIGKDRKVLNDQTFAILVLMAVITTFFTTPIVMAVYKPAKRKSKSEYAYKTIERDDPNTELRILACFHSVNNIPSILNLIEISRGMEGKEGCSSKLCVYAMHLMELTERSSAIVMVHRARKNGRPFWNKGEKSGCDQIAVAFKAFQQLSRVSIRPMTAISPLSDMHEDVCNRAERKHTAIIILPFHKHQRFDIFDGSLEATRGDFQWVNQKVLEQSPCSVGILVDRGFGSGSHICATNISSTITIFFFGGRDDREALAFGRRIAEHSRITLNIVRFILSSNMNLKSTTVDSTVMDQRALMEFNGKKTNDKSIRYEERVVSTFNDAIEVIREFSRCNLILVGQTPEAQVVESLHFKINVECPELGPVGSLLTSMELSIAASILVVQQFRGPLLSSSFM 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 10948797 10954378 - Lsi07G009230.1 Lsi07g00923 667345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00923 791 PANTHER CATION/H(+) ANTIPORTER 17 10 783 - -
Lsi07g00923 791 Pfam Sodium/hydrogen exchanger family 40 425 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Lsi07g00923 791 Gene3D - 35 440 IPR038770 -
Lsi07g00923 791 PANTHER CATION/H + ANTIPORTER 10 783 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00919 Lsi-Chr7:10797643 Lsi07g00923 Lsi-Chr7:10948797 0 dispersed
Lsi07g00921 Lsi-Chr7:10837487 Lsi07g00923 Lsi-Chr7:10948797 0 dispersed
Lsi07g00923 Lsi-Chr7:10948797 Lsi10g00730 Lsi-Chr10:10120813 0 dispersed
Lsi07g00922 Lsi-Chr7:10893709 Lsi07g00923 Lsi-Chr7:10948797 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00923 - - bhj:120078063 1354.35