Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00925 ATGGATTCCCCAATTTCCTCATTCCTTCTGCTCTTTTCCTTTTCCCTTCTCTTCGTAATCTTTGGGAATCCCTTCGATTTCTCCAGCTCCTGCAACAAACTCTTCAACTGCGGCGACATCACCAACGTCGGCTTCCCGTTCTGGGGCGACGGAAGGCCTGCCGGCTGCGGCAATCCGGCGCTGAAATTGACCTGCGAAGGAAATATGACGACGATCGTAATAATGGAAATCAAATACAAGATTCTCAAATTCAGCCTCAAAAATAATTCCCAAACGCTCACCATCGCCAGAGCCGATTACTTGGATACCCTCTGCCCTAAGAAATTCATCAACACCACAATCGATTACAACCTCTTCGATACAATTCCTACTTATCGCAACATCACCTTGCTCTATTGCTCCTCTTCTCCCTTAGCCGGGCAATTTAGCTGTCCCGGATATGAGTTCGGCTTCATTCAGGGGAGCCCCATCGGTACTAGTCTCTGCAATGTGAGCGTGATCGTGCCGGTTTCTTTGAATTTCTTCCCGCCGGTGAGCGATGTTGTGAACTCTACTGAGATGTTGAAGGCCATTAAAGAGGGATTTGAGGTGAGATTGAAGGAGGACGGCGGTGGATGTCGTACTTGTGAGCAGTCGGAGGGGGTTTGCGGTTACGATTTGAGTACGAATACGACGACTTGTTATTGTCGCGACGGCGATTATAGTGATAACGGAGCTTGTGGAGGTCCGGCATCTTCTCCAGGAATCAAGTGCCAAAATAAAGGATATGAAGATGGAAATCGAAAATTGAAAGTTGTGATTGGTGTTTGTGTTGGTTTGGGTTCAGTTGTTGCACTATTATGCATTATGATCATATACATCCGTAGAAGACCAAGGCTATCAACCAAAACTCCATTAACATCCATAATGAATTATGGACCAAAACGATACCATTACTCAGAGATAAAGAAAATGACAAACTCTTTCTTTGAAAAAATAGGTGAAGGTGGATATGGCATTGTCTATCAAGGTAAACTCGCTGATGGTACACTCGTAGCCATAAAAGTTTTAAAGGTGTCAAAACACAATGGTGAAGATTTCATAAATGAAATTACGAGTATTAGTATAACTTCCCATGTCAATATAGTTAGTCTTTTAGGTTTTTCTTATAACTCAAAGAAAATAGCTCTAGTGTATGAATTTATGGCCAATGGATCACTCGATAGATTCATGTCAAGAAGTCAAGATCTTGAGATGAGAACACTTCATAGAATCGTGGTAGGTGTGGCAAGAGGGTTAGAGTATTTACATTGTGGTTGTAATACAAGGATAGTGCATTTTGATATAAAGCCACAAAACATTCTCTTAGATGAAGATTTCAACCCTAAAATTTCTGACTTTGGCCTTGCAAAATTTTGCAAAAGAAAAGAGAGTGCAATTTCAATGTTGGGAACTAGAGGAACTGTTGGATTCATAGCACCGGAAGTTTTTAGTCGTGCATTTGGAATTGTGTCCTACAAATCTGATGTGTATAGCTATGGGATGTTGATTCTTGATCTTGTATTGGGAGGCATAAGAAATAATCCTAATTCAAGATTATTATCTGATGATGATAGTGAAATGTACTTTCCAAATTGGGTATTCAAGAATTTTGAAATGGGTAAGACTCTAAGAATGGGTCAAGACATTATCTTGTGA 1677 40.91 MDSPISSFLLLFSFSLLFVIFGNPFDFSSSCNKLFNCGDITNVGFPFWGDGRPAGCGNPALKLTCEGNMTTIVIMEIKYKILKFSLKNNSQTLTIARADYLDTLCPKKFINTTIDYNLFDTIPTYRNITLLYCSSSPLAGQFSCPGYEFGFIQGSPIGTSLCNVSVIVPVSLNFFPPVSDVVNSTEMLKAIKEGFEVRLKEDGGGCRTCEQSEGVCGYDLSTNTTTCYCRDGDYSDNGACGGPASSPGIKCQNKGYEDGNRKLKVVIGVCVGLGSVVALLCIMIIYIRRRPRLSTKTPLTSIMNYGPKRYHYSEIKKMTNSFFEKIGEGGYGIVYQGKLADGTLVAIKVLKVSKHNGEDFINEITSISITSHVNIVSLLGFSYNSKKIALVYEFMANGSLDRFMSRSQDLEMRTLHRIVVGVARGLEYLHCGCNTRIVHFDIKPQNILLDEDFNPKISDFGLAKFCKRKESAISMLGTRGTVGFIAPEVFSRAFGIVSYKSDVYSYGMLILDLVLGGIRNNPNSRLLSDDDSEMYFPNWVFKNFEMGKTLRMGQDIIL 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11018421 11031084 - Lsi07G009250.1 Lsi07g00925 667347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00925 558 Gene3D Transferase(Phosphotransferase) domain 1 395 555 - -
Lsi07g00925 558 Gene3D Phosphorylase Kinase; domain 1 295 394 - -
Lsi07g00925 558 SMART serkin_6 320 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00925 558 Pfam Wall-associated receptor kinase C-terminal 160 232 IPR032872 -
Lsi07g00925 558 Pfam Wall-associated receptor kinase galacturonan-binding 31 96 IPR025287 GO:0030247
Lsi07g00925 558 Pfam Protein kinase domain 323 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00925 558 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Lsi07g00925 558 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Lsi07g00925 558 SUPERFAMILY Protein kinase-like (PK-like) 298 518 IPR011009 -
Lsi07g00925 558 PANTHER RUST RESISTANCE KINASE LR10-RELATED 23 550 IPR045874 GO:0004672
Lsi07g00925 558 PANTHER - 23 550 - -
Lsi07g00925 558 ProSiteProfiles Protein kinase domain profile. 320 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00432 Lsi-Chr3:4898019 Lsi07g00925 Lsi-Chr7:11018421 1.06E-09 dispersed
Lsi04g00233 Lsi-Chr4:2365434 Lsi07g00925 Lsi-Chr7:11018421 3.61E-94 dispersed
Lsi07g00689 Lsi-Chr7:7422634 Lsi07g00925 Lsi-Chr7:11018421 9.87E-128 dispersed
Lsi07g00690 Lsi-Chr7:7431613 Lsi07g00925 Lsi-Chr7:11018421 5.04E-45 dispersed
Lsi07g00925 Lsi-Chr7:11018421 Lsi04g02189 Lsi-Chr4:28945214 1.40E-61 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83790 PF00069 Pkinase 4.70E-46 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00925 - - qsu:112015593 474.552