Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00938 ATGGGCGCTCAGAGAAAGGGAGCATCACGGGTTTCTGAGGACCCCGAGGAGTTGGCACGAGTTTCGTTGCAGGCTGTTCTTCTTGCCGATAGCTTTACCACTAAGTTTCGCCCCATAACGCTTGAACGCCCCAAGGTATTATTGCCGCTCGTAAATGTCCCGATGATTAATTATACCTTATCCTGGCTCGAATCAGCTGGTGTTGAAGAGGTGTTTGTATTTTGCTGTGCTAACTCGAAGCAAGTAATTGATTATTTGGAGAACTCTGAGTGGGTATCTCTACCAGACTTTGCAGTCACAACTATAGAGTCGCACAACTCCATTAGTGCTGGAGATGCCTTGCGTTTGATCTATGAAAGAAATGTGATACATGGTGATTTTGTACTTATCACTGGAGACACCATAAGCAACATGTCACTTACGCAAGCTCTTCAAGAACACAAAGAGAGAAAGAAGAAAGATAGTAATGCCGTAATGACTATGGTTGTCAAACGGTCAAAGCCTTCTCCTATCACACACCAATCTCGGCTTGGCACCGATGAACTATTTATGGCAATTGATCACAATACTAAGCAGCTCTTGTACTATGAGGACAAGGTTGACCATTCAAAAGGAATTATACATCTTGACAAGTCATTGCTAATGGATAATCCTTCCATATCACTTCATAACGACATGCAGGATTGTTACATAGACATATGCTCCCCAGAAGTACTCAGCTTGTTTACTGACAATTTTGACTACCAACATCTACGTCGTCATTTTGTCAAGGGCTTGCTCCTAGATGATATCATGGGTTACAAGATTTACACACACGAAATTTGCTCAAGCTATGCAGCTAGAATTGATAATTATCGAAGCTATGACACCGTTAGTAAGGACATAATACAAAGGTGGACATATCCACTAGTACCTGATGTTAAATTCTTTGGGAATTCTGCTTATAAGCTTGAAAGGCAGGGAATGTATCGAGCATCAGAAATACTGCAGGCACGCTCTGCACAGGTTGGTCCGTTTACTGTTATCGGAGATAACAGCAACATTGGTGGTAACACCAAAATTACGAATTCAATTATTGGGCAAGGTTGTAATATTGGATCAAATGTTACAATTGAAGGCTCTTATATATGGGACAATGTGACCATTGAAGATGGCTGTAAACTCAGTCATGCTATCGTATGTGATGGAGTTGTTATAAAGTCAGGAGCAGAACTGGAACCTGGTGTAATTTTGTCTTTCAAGGTTGTTGTAGGGGATCAATTTACTGTTCCATCATATTCAAAGGTATCTTTGTTTCAGCAGCCAACCAATCAAGATAGCGATGAGGAGCTGGAATATGCAGATAATAGCAGTGGCATTGTAGAATTTGCAGATACAACAGACAAGTCAAATAGTGCACTGATGTCCAAATCGCTGGAAATGCAAGGCTGGCCTGCATCTGAGCTTTCGGTAGTTTATGGTGTTTACATATATGCCACCAGAGTAGAACCTGTTGGAAGTCCATGCCCTATGCTAGGCAAGGGAGGTCTAGGACATGTTTGGTCAATTTGTGAAGGAAGTGTCGAAGAAGAATGGAGGCACTCAGTTGCACCCATTCCTGCCGATAAACTTGAGAAGGTTCTGCATAAAGCAACAGATGACGAGCTGGAGTTAACTCAAGATGCTAATATTTTACCACCTTCAGGAGAGTTGAAGTCCGACTCATATGTCTCAGATGGTGATGATAACGAAAGTTCTAGAGATGACTCCATCCACTTTGAGAAAGAGGTTGAAGCAACGTTTCTGAGGGCCGTGCATGAAAATATTGAAGTAGCAAATGTAATTTTGGAAGTGAACTCACTACGGTATGCTATTATGCTTTTTGTGATTGAAGTGATATTAAAATTTGAAGAGATATGCCTGGAATCTGCCAAGGAATTCACTCCACATTTTACTAAGATTTTGTGGCATCTATATGACCAAGAAATCATCCAAGAAGAGGCTATTCTGAAGTGGGATGCTGAGAAAAAGGAAGCGGATGATTCGGATAAGCTTTTTGTTAAGCAGGCTGAGAAATTCATTGAATGGTTAAAAGTTGCATCAGAGGAAGAGGAAGAGGATGAAGAGGAGGAATAG 2115 41.32 MGAQRKGASRVSEDPEELARVSLQAVLLADSFTTKFRPITLERPKVLLPLVNVPMINYTLSWLESAGVEEVFVFCCANSKQVIDYLENSEWVSLPDFAVTTIESHNSISAGDALRLIYERNVIHGDFVLITGDTISNMSLTQALQEHKERKKKDSNAVMTMVVKRSKPSPITHQSRLGTDELFMAIDHNTKQLLYYEDKVDHSKGIIHLDKSLLMDNPSISLHNDMQDCYIDICSPEVLSLFTDNFDYQHLRRHFVKGLLLDDIMGYKIYTHEICSSYAARIDNYRSYDTVSKDIIQRWTYPLVPDVKFFGNSAYKLERQGMYRASEILQARSAQVGPFTVIGDNSNIGGNTKITNSIIGQGCNIGSNVTIEGSYIWDNVTIEDGCKLSHAIVCDGVVIKSGAELEPGVILSFKVVVGDQFTVPSYSKVSLFQQPTNQDSDEELEYADNSSGIVEFADTTDKSNSALMSKSLEMQGWPASELSVVYGVYIYATRVEPVGSPCPMLGKGGLGHVWSICEGSVEEEWRHSVAPIPADKLEKVLHKATDDELELTQDANILPPSGELKSDSYVSDGDDNESSRDDSIHFEKEVEATFLRAVHENIEVANVILEVNSLRYAIMLFVIEVILKFEEICLESAKEFTPHFTKILWHLYDQEIIQEEAILKWDAEKKEADDSDKLFVKQAEKFIEWLKVASEEEEEDEEEE 704
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11562662 11585553 + Lsi07G009380.1 Lsi07g00938 667360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00938 704 CDD eIF-2B_epsilon_N 23 239 IPR035543 -
Lsi07g00938 704 SUPERFAMILY ARM repeat 586 691 IPR016024 -
Lsi07g00938 704 MobiDBLite consensus disorder prediction 568 582 - -
Lsi07g00938 704 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 623 701 - -
Lsi07g00938 704 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT EPSILON 10 617 - -
Lsi07g00938 704 Coils Coil 692 704 - -
Lsi07g00938 704 CDD W2_eIF2B_epsilon 581 694 IPR044123 GO:0005085|GO:0031369
Lsi07g00938 704 SMART 542_3 613 696 IPR003307 GO:0005515
Lsi07g00938 704 Gene3D - 573 620 - -
Lsi07g00938 704 Gene3D - 622 701 - -
Lsi07g00938 704 ProSiteProfiles W2 domain profile. 523 700 IPR003307 GO:0005515
Lsi07g00938 704 SUPERFAMILY Trimeric LpxA-like enzymes 267 429 IPR011004 -
Lsi07g00938 704 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 11 303 IPR029044 -
Lsi07g00938 704 MobiDBLite consensus disorder prediction 555 582 - -
Lsi07g00938 704 SUPERFAMILY Nucleotide-diphospho-sugar transferases 22 369 IPR029044 -
Lsi07g00938 704 CDD LbH_eIF2B_epsilon 341 419 - -
Lsi07g00938 704 Gene3D Hexapeptide repeat proteins 319 430 - -
Lsi07g00938 704 Pfam eIF4-gamma/eIF5/eIF2-epsilon 624 700 IPR003307 GO:0005515
Lsi07g00938 704 Pfam Nucleotidyl transferase 25 168 IPR005835 GO:0009058|GO:0016779
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g00423 Lsi-Chr6:4651648 Lsi07g00938 Lsi-Chr7:11562662 1.25E-22 dispersed
Lsi07g00938 Lsi-Chr7:11562662 Lsi06g01515 Lsi-Chr6:25573687 4.52E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00938 K03240 - csv:101217025 1234.17