Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00939 ATGATTAAAAATTCAAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCCGCAGCGGCGGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTAAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCAGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCAACCGTGCACCCGCATAGATCGGAGTTCAAAATCCTCGAGAAGGCCGAGGTCGAGGACGAGGACGAGACCGATAAACAAAAGCAACACAAATCCAATAATAATTCTAATAATAATCCCTCTCACCCTTCTTCTTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACTACATCTCAAGCTGAGGATAATAATAATCTTCATAACTTCAATAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATAATAATAATACATCTCCTAATTTCCATCCCAACGTTAGGCCTTTCCACTTCAGTATGGCTACCAAATTCCTTTCTCAAGCTAAAAATAACAATTCAGATCCTGCAAGTAAGGATCATGGCTTTGCTTCTCATCAATGA 897 44.26 MIKNSKEENSPPPKLAAAGGSSSSSAAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHPHRSEFKILEKAEVEDEDETDKQKQHKSNNNSNNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSSTTTTNNLPFLTTSQAEDNNNLHNFNNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNNNNTSPNFHPNVRPFHFSMATKFLSQAKNNNSDPASKDHGFASHQ 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11635086 11635982 - Lsi07G009390.1 Lsi07g00939 667361

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00939 298 MobiDBLite consensus disorder prediction 1 30 - -
Lsi07g00939 298 PANTHER OS05G0513100 PROTEIN 18 282 - -
Lsi07g00939 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 282 IPR005333 GO:0003700
Lsi07g00939 298 MobiDBLite consensus disorder prediction 157 174 - -
Lsi07g00939 298 Pfam TCP family transcription factor 49 165 IPR017887 -
Lsi07g00939 298 MobiDBLite consensus disorder prediction 143 174 - -
Lsi07g00939 298 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00939 - - - csv:101216548 390.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00133 Lsi-Chr1:1368575 Lsi07g00939 Lsi-Chr7:11635086 3.20E-30 dispersed
Lsi02g00906 Lsi-Chr2:8673941 Lsi07g00939 Lsi-Chr7:11635086 2.44E-29 dispersed
Lsi07g00939 Lsi-Chr7:11635086 Lsi10g01578 Lsi-Chr10:20250077 6.33E-24 dispersed
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00939 Lsi-Chr7:11635086 7.50E-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi09g00863 . 50 270 TCP Transcription Factor Family AT5G23280 64.0 1.7e-66 249.6
Lsi04g00792 . 37 258 TCP Transcription Factor Family AT5G23280 60.3 1.6e-61 233.0
Lsi09g01921 . 59 337 TCP Transcription Factor Family AT2G45680 54.1 2.0e-65 246.5
Lsi04g00434 . 65 159 TCP Transcription Factor Family AT3G47620 89.7 8.2e-41 165.2
Lsi02g00060 CCT,ECH 17 115 TCP Transcription Factor Family AT3G47620 83.8 2.7e-39 160.2
Lsi04g00710 . 135 217 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Lsi04g00710 . 135 227 TCP Transcription Factor Family AT1G69690 82.8 1.4e-36 150.6
Lsi07g01491 . 48 315 TCP Transcription Factor Family AT3G27010 56.9 1.5e-59 226.9
Lsi09g00863 . 46 269 TCP Transcription Factor Family AT5G08330 62.1 1.2e-64 243.4
Lsi04g00792 . 9 256 TCP Transcription Factor Family AT5G08330 56.0 8.4e-63 237.3
Lsi04g00710 . 134 365 TCP Transcription Factor Family AT1G35560 50.4 4.7e-43 172.2
Lsi06g01407 . 32 134 TCP Transcription Factor Family AT5G60970 74.0 8.8e-40 161.4
Lsi07g00939 . 32 138 TCP Transcription Factor Family AT3G02150 69.9 2.4e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25655 PF03634 TCP 1.10E-28 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g00939 Lsi_Chr07 FPKM 6.651573 5.638162 9.022015 9.691111 0.485852 0.411892 0.0 0.273377 0.139332 0.244093