Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g00939 | ATGATTAAAAATTCAAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCCGCAGCGGCGGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTAAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCAGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCAACCGTGCACCCGCATAGATCGGAGTTCAAAATCCTCGAGAAGGCCGAGGTCGAGGACGAGGACGAGACCGATAAACAAAAGCAACACAAATCCAATAATAATTCTAATAATAATCCCTCTCACCCTTCTTCTTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACTACATCTCAAGCTGAGGATAATAATAATCTTCATAACTTCAATAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATAATAATAATACATCTCCTAATTTCCATCCCAACGTTAGGCCTTTCCACTTCAGTATGGCTACCAAATTCCTTTCTCAAGCTAAAAATAACAATTCAGATCCTGCAAGTAAGGATCATGGCTTTGCTTCTCATCAATGA | 897 | 44.26 | MIKNSKEENSPPPKLAAAGGSSSSSAAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHPHRSEFKILEKAEVEDEDETDKQKQHKSNNNSNNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSSTTTTNNLPFLTTSQAEDNNNLHNFNNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNNNNTSPNFHPNVRPFHFSMATKFLSQAKNNNSDPASKDHGFASHQ | 298 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 11635086 | 11635982 | - | Lsi07G009390.1 | Lsi07g00939 | 667361 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g00939 | 298 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Lsi07g00939 | 298 | PANTHER | OS05G0513100 PROTEIN | 18 | 282 | - | - | |
Lsi07g00939 | 298 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 18 | 282 | IPR005333 | GO:0003700 | |
Lsi07g00939 | 298 | MobiDBLite | consensus disorder prediction | 157 | 174 | - | - | |
Lsi07g00939 | 298 | Pfam | TCP family transcription factor | 49 | 165 | IPR017887 | - | |
Lsi07g00939 | 298 | MobiDBLite | consensus disorder prediction | 143 | 174 | - | - | |
Lsi07g00939 | 298 | ProSiteProfiles | TCP domain profile. | 49 | 107 | IPR017887 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g00133 | Lsi-Chr1:1368575 | Lsi07g00939 | Lsi-Chr7:11635086 | 3.20E-30 | dispersed | |
Lsi02g00906 | Lsi-Chr2:8673941 | Lsi07g00939 | Lsi-Chr7:11635086 | 2.44E-29 | dispersed | |
Lsi07g00939 | Lsi-Chr7:11635086 | Lsi10g01578 | Lsi-Chr10:20250077 | 6.33E-24 | dispersed | |
Lsi06g01407 | Lsi-Chr6:24642297 | Lsi07g00939 | Lsi-Chr7:11635086 | 7.50E-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
25655 | PF03634 | TCP | 1.10E-28 | No_clan | Lsi | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g00939 | - | - | csv:101216548 | 390.963 |