Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00939 ATGATTAAAAATTCAAAAGAAGAGAATTCACCACCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCCGCAGCGGCGGCGACGCCATGGCTTAGGTTGAAGGATCCAAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCGACCGCAATTCAGCTCTATGATCTTCAAGACCGCCTCGGCCTAAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCAGCAAGCCTCGGCCTTCACTACCAATCTATGCTACCACCAACCGTGCACCCGCATAGATCGGAGTTCAAAATCCTCGAGAAGGCCGAGGTCGAGGACGAGGACGAGACCGATAAACAAAAGCAACACAAATCCAATAATAATTCTAATAATAATCCCTCTCACCCTTCTTCTTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCATCAACAACAACAACAAATAATCTTCCATTTCTTACTACATCTCAAGCTGAGGATAATAATAATCTTCATAACTTCAATAATCATCTCAATTTGTCTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATAATAATAATACATCTCCTAATTTCCATCCCAACGTTAGGCCTTTCCACTTCAGTATGGCTACCAAATTCCTTTCTCAAGCTAAAAATAACAATTCAGATCCTGCAAGTAAGGATCATGGCTTTGCTTCTCATCAATGA 897 44.26 MIKNSKEENSPPPKLAAAGGSSSSSAAAATPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHPHRSEFKILEKAEVEDEDETDKQKQHKSNNNSNNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSSTTTTNNLPFLTTSQAEDNNNLHNFNNHLNLSLPSPLSLEFNHLHQNFFINNNSLNNNNNTSPNFHPNVRPFHFSMATKFLSQAKNNNSDPASKDHGFASHQ 298
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11635086 11635982 - Lsi07G009390.1 Lsi07g00939 667361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00939 298 MobiDBLite consensus disorder prediction 1 30 - -
Lsi07g00939 298 PANTHER OS05G0513100 PROTEIN 18 282 - -
Lsi07g00939 298 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 282 IPR005333 GO:0003700
Lsi07g00939 298 MobiDBLite consensus disorder prediction 157 174 - -
Lsi07g00939 298 Pfam TCP family transcription factor 49 165 IPR017887 -
Lsi07g00939 298 MobiDBLite consensus disorder prediction 143 174 - -
Lsi07g00939 298 ProSiteProfiles TCP domain profile. 49 107 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00133 Lsi-Chr1:1368575 Lsi07g00939 Lsi-Chr7:11635086 3.20E-30 dispersed
Lsi02g00906 Lsi-Chr2:8673941 Lsi07g00939 Lsi-Chr7:11635086 2.44E-29 dispersed
Lsi07g00939 Lsi-Chr7:11635086 Lsi10g01578 Lsi-Chr10:20250077 6.33E-24 dispersed
Lsi06g01407 Lsi-Chr6:24642297 Lsi07g00939 Lsi-Chr7:11635086 7.50E-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25655 PF03634 TCP 1.10E-28 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00939 - - csv:101216548 390.963