Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00951 ATGATTATGGCTCTTCCCATTTCCAGATTACCCTCTCTCTTTCCCCTTCTCGCTATTTTTCTTGCCTTCTCTAGCTTTCTTGCTTCAACAGAAGCATATGATCCACTTGATCCAAATGGAAACATTACTATCAAATGGGATGTTATGAGCTGGACTGCTGATGGATATGTTGCTGTTGTTACTCTGTATAATTTCCAACAATATCGTCATATTCAAACACCGGGATGGTCTCTCCAATGGAAATGGGCAAAGAAAGAGGTCATATGGGCCATGTTGGGAGGGCAAACAACAGAGCAAGGTGATTGTTCTAGATATAAAGGGAACATTCCCCATTGCTGCAAGAAGGATCCAACAGTTGTCGATCTATTGCCTGGAACTCCTTATAACCAGCAGATTGCAAATTGCTGCAAAGGTGGAGTTCTTAACTCCTGGGTGCAAGATCCAGCTACTGCAGTGAGCTCATTTCAGGTCAGTGTTGGTGCAGCCGGAACCTCAAATAAAACTGTCCGACTGCCAAAGAACTTCACCTTAAAAGCACCCGGACCTGGTTATACCTGTGGGCCGGCCAAAATTGTTAAACCGAGCAAATTCATTTCCCCTGACAAACGGAGAGTTACACAGGCATTGATGACATGGAATGTTACATGCACATATTCACAATTTCTGGCCCAAAAAACTCCGACTTGCTGTGTCTCGCTGTCGTCATTTTACAACGACACAATTGTTTCTTGCCCGAAGTGCTCTTGTGGCTGCCAAAGCAACTTGAACGCACCCCAGAATTGTGTGGAGCCAAATTCTCCGTATTTAGCCTCCGTTGTTACCAGTGCTAGTTCTAGCAAGAACAATTTGACACCTTTGGTTCAGTGTACTGGCCATATGTGCCCAATTCGAGTTCACTGGCATGTGAAGATTAACTATAAGGAGTATTGGCGTGTGAAGATCACAATTACAAACTTCAATTACATGATGAACTATACAAATTGGAACTTAGTTGTCCAACATCCCAACTTCGACAATCTAACAAAGATTTTCAGCTTCAACTACCAGTCAATCAATCCGTATGGAACAATAAATGATACTGCAATCCTGTGGGGAGTTAAGTTCTACAACGATTTGCTCATGCAAGCAGGTCCCCTTGGGAATGTGCAGACAGAGCTACTTTTCCAGAAGGATCCATCGGCTTTCACATTTGACAAAGGCTGGGCTTTTCCTCGGAGGATCTATTTTAATGGCGACAATTGTGTTATGCCACCTCCAGAAGCCTATCCCTACTTACCGAACACGGGTTCTAAGCAACATGTCTCAATGTTTACTATGCTATTGCTGATTTCCTTGACTCTCTTGTCCTTTCACCAATCGTTTGCATAA 1368 43.35 MIMALPISRLPSLFPLLAIFLAFSSFLASTEAYDPLDPNGNITIKWDVMSWTADGYVAVVTLYNFQQYRHIQTPGWSLQWKWAKKEVIWAMLGGQTTEQGDCSRYKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWVQDPATAVSSFQVSVGAAGTSNKTVRLPKNFTLKAPGPGYTCGPAKIVKPSKFISPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVSCPKCSCGCQSNLNAPQNCVEPNSPYLASVVTSASSSKNNLTPLVQCTGHMCPIRVHWHVKINYKEYWRVKITITNFNYMMNYTNWNLVVQHPNFDNLTKIFSFNYQSINPYGTINDTAILWGVKFYNDLLMQAGPLGNVQTELLFQKDPSAFTFDKGWAFPRRIYFNGDNCVMPPPEAYPYLPNTGSKQHVSMFTMLLLISLTLLSFHQSFA 455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11983015 11986121 + Lsi07G009510.1 Lsi07g00951 667373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00951 455 PANTHER COBRA-LIKE PROTEIN 11 451 - -
Lsi07g00951 455 PANTHER PROTEIN COBRA 11 451 IPR006918 GO:0010215|GO:0031225
Lsi07g00951 455 PIRSF COBRA 7 454 IPR006918 GO:0010215|GO:0031225
Lsi07g00951 455 Pfam COBRA-like protein 56 219 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01402 Lsi-Chr6:24572437 Lsi07g00951 Lsi-Chr7:11983015 0 dispersed
Lsi07g00951 Lsi-Chr7:11983015 Lsi07g00952 Lsi-Chr7:11986324 0 tandem
Lsi05g00155 Lsi-Chr5:2275670 Lsi07g00951 Lsi-Chr7:11983015 2.87E-84 transposed
Lsi11g01178 Lsi-Chr11:20265581 Lsi07g00951 Lsi-Chr7:11983015 8.29E-86 transposed
Lsi02g00135 Lsi-Chr2:1100186 Lsi07g00951 Lsi-Chr7:11983015 0 wgd
Lsi06g01401 Lsi-Chr6:24569403 Lsi07g00951 Lsi-Chr7:11983015 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00951 - - csv:101207224 898.656