Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00952 ATGAGGTTGTTCATTTCAGCTTTCCTTTTTGTCTTATTCTCTCATGGAGCTGCATATGATCCTTTGGATCCGAATGGGAACATTACGATCAAATGGGACATCATGTCTTGGACGCCCGATGGCTATGTGGCGGTAGTTACGTTGAACAACTTCCAAATGTACCGGCATATAATGAGCCCTGGGTGGACGATGGGGTGGACTTGGCCGAAAAAGGAAGTGATATGGTCGATGGTTGGGTCGCAGACGACGGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAACATTCCTCACTGCTGCAAGAAAAACCCCACTGTTGTGGATTTGATGCCTGGAGTTCCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTTAGTATTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAGCTCCCTAAGAACTTCACTTTGCTCGGTCCCGGTCCCGGATACACTTGTGGCCCTGCAAAGGTTGTGCCTTCCACCACTTTCCTCACACCCGACCGCCGCCGCAAAACTCAAGCTCTGATGACTTGGAATGTAACCTGCACTTACTCTCAGTTTCTAGCAAGAAAGAATCCTAATTGTTGTGTTTCTTTCTCATCTTTCTACAACGATACAATCACATCTTGCCCGTCTTGCGCCTGTGGTTGCCAAAACAAGAACAACTGTGTCCAGAGTGACTCTAAGATTCTTAAGCTGGTTGGAATCAATACACCAAGGAAAGACAATGCCCCGTTGCTGCATTGCACACATCACATGTGCCCCGTTCGAGTTCACTGGCATGTAAAGCAAAATTACAAAGAATATTGGCGGGTGAAGATCGCCATCACCAACTTCAACTACCGGATGAACTATTCGCTTTGGTCTCTCGTTGTCCAGCACCCGAATCTGAACAATGTAACCCAAGTTTTCAGCTTTGACTACAAACCTCTGGTTCCCTATGAATCAATCAATGACACGGGAATGTTTTACGGGACGAAGTTCTATAACGATCTTTTGATGGAAGCGGGGCCATTTGGGAATGTACAATCAGAGGTGTTGCTGCGCAAGGACCAGAACACCTTCACTTTCAAGCAGGGATGGGCATTTCCTCAAAAAGTTTACTTCAACGGCGACGAGTGCATGCTTCCGCCACCCGACACATACCCATTCCTGCCAAATGCTGCCCGGGAAAGGCCAGTTGACCTCTCAACTTCAATTGCTTTGCTGCTGCTCTTCCTGCTGCTAGCTATTTGCTGA 1299 47.81 MRLFISAFLFVLFSHGAAYDPLDPNGNITIKWDIMSWTPDGYVAVVTLNNFQMYRHIMSPGWTMGWTWPKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQLSIGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTTFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCACGCQNKNNCVQSDSKILKLVGINTPRKDNAPLLHCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGTKFYNDLLMEAGPFGNVQSEVLLRKDQNTFTFKQGWAFPQKVYFNGDECMLPPPDTYPFLPNAARERPVDLSTSIALLLLFLLLAIC 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 11986324 11988591 - Lsi07G009520.1 Lsi07g00952 667374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00952 432 Pfam COBRA-like protein 42 205 IPR006918 GO:0010215|GO:0031225
Lsi07g00952 432 PIRSF COBRA 1 432 IPR006918 GO:0010215|GO:0031225
Lsi07g00952 432 PANTHER PROTEIN COBRA 5 428 IPR006918 GO:0010215|GO:0031225
Lsi07g00952 432 PANTHER COBRA-LIKE PROTEIN 5 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00135 Lsi-Chr2:1100186 Lsi07g00952 Lsi-Chr7:11986324 0 dispersed
Lsi06g01401 Lsi-Chr6:24569403 Lsi07g00952 Lsi-Chr7:11986324 0 dispersed
Lsi07g00952 Lsi-Chr7:11986324 Lsi11g01178 Lsi-Chr11:20265581 1.47E-71 dispersed
Lsi07g00951 Lsi-Chr7:11983015 Lsi07g00952 Lsi-Chr7:11986324 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00952 - - csv:101217724 875.159