Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00957 ATGGGAAGAGGAAGAGTAGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTGACATTTGCAAAGAGAAGAAATGGGCTTTTGAAGAAGGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAATCGTGGCAAGCTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTGGAGAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACAAAACCGGCCAAAGAACTTGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGGTAGGTTTGAGTCTTTACAAAGAACTCAGAGAAATCTTCTTGGTGAGGACTTGGGTCCATTGAACTCAAAAGAGCTCGAACAACTGGAGCGTCAGCTTGAGTCTTCTCTGAAGCAAGTTAGGTCTACCAAGACTCAGTACATGCTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGCAAATAAAGGTCTACATTAAAATTGTAATGAAACTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGCATGTCATATGGTCCACAAAATGCCCAAACTCAGGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTACACTTCTGCAGTATCAGACCAAATTACAAGCACCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 765 42.88 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKGRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALQIKVYIKIVMKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTSAVSDQITSTTAPTHAQQVNGFLPGWML 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12109274 12118412 + Lsi07G009570.1 Lsi07g00957 667379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00957 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 Coils Coil 150 170 - -
Lsi07g00957 254 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 239 - -
Lsi07g00957 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi07g00957 254 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lsi07g00957 254 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lsi07g00957 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 ProSiteProfiles K-box domain profile. 87 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi07g00957 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 Coils Coil 121 144 - -
Lsi07g00957 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi07g00957 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Lsi07g00957 254 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00957 Lsi-Chr7:12109274 Lsi09g01915 Lsi-Chr9:27992713 1.39E-58 dispersed
Lsi08g00906 Lsi-Chr8:17434534 Lsi07g00957 Lsi-Chr7:12109274 3.81E-36 dispersed
Lsi08g00907 Lsi-Chr8:17449704 Lsi07g00957 Lsi-Chr7:12109274 1.06E-40 dispersed
Lsi10g01545 Lsi-Chr10:19862865 Lsi07g00957 Lsi-Chr7:12109274 3.78E-32 dispersed
Lsi07g00957 Lsi-Chr7:12109274 Lsi07g00959 Lsi-Chr7:12284425 7.15E-50 proximal
Lsi02g00512 Lsi-Chr2:4335357 Lsi07g00957 Lsi-Chr7:12109274 2.96E-38 transposed
Lsi04g01838 Lsi-Chr4:25508920 Lsi07g00957 Lsi-Chr7:12109274 3.45E-26 transposed
Lsi05g01280 Lsi-Chr5:20545030 Lsi07g00957 Lsi-Chr7:12109274 6.16E-48 transposed
Lsi09g01728 Lsi-Chr9:25887574 Lsi07g00957 Lsi-Chr7:12109274 1.23E-61 transposed
Lsi01g00027 Lsi-Chr1:320358 Lsi07g00957 Lsi-Chr7:12109274 2.77E-29 transposed
Lsi02g00138 Lsi-Chr2:1135478 Lsi07g00957 Lsi-Chr7:12109274 4.29E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25656 PF01486 K-box 2.50E-27 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00957 K09264 - csv:101208204 464.536