Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00959 ATGGGAAGAGGCAGAGTTCAGCTGAAGAGAATAGAGAACAAAATCAGTCGCCAAGTTACGTTCTCAAAGCGTAGAGCTGGTTTACTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGAGGCTGATGTTGCTTTGATTGTCTTCTCCACTAAAGGAAAACTCTTTGAGTACTCCTCTGATTCCAGCATGGAGAAAATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCACTGGCCCCAAATGGAGATTCTGAATTACAGGTAAGTTGGTGTCAGGAGTATCCAAAACTTGCAGTCAGATTGGAAATTATACAGAAGAACTTGAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATACATCACTCAAGCGCATAAGATCTAGAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTGAAAGAGAATGAGAAGGTTTTGGTTGAACGTGGACACTGCGACGACCTCCCAAACTTGGTTCATAATCAGCCCATTTTTGCAATGCCACCACCAATTATTCCTTCTTTATCTATTGGAGTAAACTTGCATGGAAGAGGATCAGATGAAGATGAAACAAGGGCAACAAACGTCAACAACATCCAAATACCAGCATGGATGCTTAGCCATGTGACTGAAAATCCTCATAACTAA 708 41.1 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCEADVALIVFSTKGKLFEYSSDSSMEKILEKYERYSYAERPLAPNGDSELQVSWCQEYPKLAVRLEIIQKNLRHYLGEELDPLNLRELQSLEQQLDTSLKRIRSRKERELQEENRQLANKVKENEKVLVERGHCDDLPNLVHNQPIFAMPPPIIPSLSIGVNLHGRGSDEDETRATNVNNIQIPAWMLSHVTENPHN 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 12284425 12290374 + Lsi07G009590.1 Lsi07g00959 667381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00959 235 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lsi07g00959 235 ProSiteProfiles K-box domain profile. 89 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi07g00959 235 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Lsi07g00959 235 Coils Coil 126 168 - -
Lsi07g00959 235 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lsi07g00959 235 PANTHER BNAA09G02740D PROTEIN 1 210 - -
Lsi07g00959 235 Pfam K-box region 89 164 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lsi07g00959 235 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lsi07g00959 235 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lsi07g00959 235 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00138 Lsi-Chr2:1135478 Lsi07g00959 Lsi-Chr7:12284425 2.82E-49 dispersed
Lsi07g00959 Lsi-Chr7:12284425 Lsi08g00907 Lsi-Chr8:17449704 7.32E-63 dispersed
Lsi07g00957 Lsi-Chr7:12109274 Lsi07g00959 Lsi-Chr7:12284425 7.15E-50 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25657 PF01486 K-box 1.80E-19 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00959 K09264 - csv:101218674 400.979