Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g00984 | ATGACACGGGGCGGAGTAGTTCAAGAAATGGCTCACACTGCGAACGGTCCCGACACTGGAAACTGCGTTTCTCTTCTACGAGTAAACAGTACAAATTCAAGCCAAAGCAATATGCTAATCCTGCAAGAAAGCTGCACGGACCCAACAGCCTCATTTGTGCCAGGCGACAAAGACATAGCAATGAACGTCGTCCTGAACGGCAGCAATCCCGACTACGTGGCACTTCTCCCTTCAGGGTTCGCCATTCTCCCAGACGGCGACGGAAACGGCGGAGAGGGCGTTTTGGGTGGGTCGTTGCTGACTGTTGCATTTCAAATAGTGGTAGATTCAGTGCCAACGGCAAAACTGTCACTTACGTCAGTTGCAACGGTAAACAAGCTAATAGCTTGTACGATTGAGAGGATAAAAGCGTCATTATGA | 420 | 49.76 | MTRGGVVQEMAHTANGPDTGNCVSLLRVNSTNSSQSNMLILQESCTDPTASFVPGDKDIAMNVVLNGSNPDYVALLPSGFAILPDGDGNGGEGVLGGSLLTVAFQIVVDSVPTAKLSLTSVATVNKLIACTIERIKASL | 139 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 13412134 | 13413393 | + | Lsi07G009840.1 | Lsi07g00984 | 667406 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g00984 | 139 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG2 | 3 | 139 | - | - | |
| Lsi07g00984 | 139 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 | 3 | 139 | IPR042160 | - | |
| Lsi07g00984 | 139 | SUPERFAMILY | Bet v1-like | 12 | 136 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g00984 | Lsi-Chr7:13412134 | Lsi01g00412 | Lsi-Chr1:3515519 | 3.18E-54 | dispersed | |
| Lsi07g00984 | Lsi-Chr7:13412134 | Lsi11g01463 | Lsi-Chr11:23201740 | 2.07E-62 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g00984 | K09338 | - | csv:101214763 | 206.453 |