Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g00990 ATGGGTTCTTCTTCGTCTTCTTCTTCAGTCATCAAATGGTTCACCTTCTGCAGACCTACCTCTCCAATTCTTCTTTCCAAGCTCTTTTTCCTTTTCTCTATCCTCTTCTTCTTTAACTCTCATCTTATTTTCGCCGATTCCGACAAATCCGTCCTTCTTCAGTTCAAAAATGCTCTTTCCGACCCATCTGCTTTGCTTTCCTCCTGGACTCCCACTGCTTCTGATTACTGCTTATGGTTTGGCGTTTCCTGCGACTTCAATTCTCGGGTTATCTCCCTCAACATTTCTGGGAATGGTGGTTCAGGTAATTCCAATGCCTTTTCCTGCTCTGATTCTTCTAAATTCCCTCTTTATGGACTTGGGGTCAGGAGGGGTTGTGTGGGTAATAGAGGCTTACTCATTGGGAAGCTTCCGCCGGTGATTGGGAACCTCACTCAGCTCAGGACTTTGTCTCTTCCGTTTCATGCTTTTGAGGGTCAGCTTCCTCGTGAAATCTTTGGATTGGAGAACCTTGAGGTTCTTGATCTGGAAGGGAACTCTGTCACTGGGCTACTTCCTAATGATTTTGCCAGGCTGAGCAAGTTGCGTGTTCTCAATCTTGCATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGCTTGTAAGAGTTTGGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCAGTTGAGAGGGGTCTACTTGTCTTTCAATTTTTTTACTGGATCTATTCCGAGTGAGCTTGGGAATAACTGTGGAAAGCTTGAGCATCTCGATCTGTCTGGTAATTTTTTGGTCAGTGGAATTCCAAGCAATCTGGGAAATTGCACTCAGTTGCAGACATTGTTGCTGTACTCTAATATGCTGGAGGAGGCCATTCCAGCTGGAATTGGTATGTTGCAGAATCTGGAAGTGCTTGATCTTTCTAGGAATAGCCTCAGTGGTCCAATACCCTCCGAGCTAGGAAATTGCTTGCAGTTGTCTGTCCTTGTGCTCTCGAATCTCTTCGATCCAATTCCCAAGATCAACTACACAGACGGCGACTCTCCAACTGAGGAACTTAGTGATGATAATTTTAACTATTTTGCGGGTGGTATACCTGAGACAATAACAGCCCTTCCAAAGCTGAGGATATTGTGGGCCCCTAGTGCAACCCTCGATGGCAGGTTCCCTTCCCAATGGGGTAAGTGTGAAAGCTTGGAGATGATCAACTTAGCTGGTAATTACATTTATGGGGAGCTTCCCAGTGGATTTAGCGTCTGCAAAAAGCTTCAAGTCCTTGATTTAAGCTCAAACCGGCTTTCTGGAGAACTTGATAAAAACCTACCAGTTCCTTACATGTCTCTGTTTGATCTTAGCGGTAACCACTTTACTGGTGAGATTCCTACGTTCTGTGGCAATGATTGCTCACCACCGAAGTCCCATTTGAATGGATATTTGAATTTTGGCGATGCCTCGTCCCGGTATCTTTCATTTTTTGCCACTAGTATTCGAGATTCAACCCCTTTTGAATTTGTTGGAAATGGTGATCTGATAATACATAACTTTGGGGACAATAACTTTACAGGCAATCTTCTGTCGTTGCCGTTTCCACGTGAAAGACTGGGAAGGAAAACTATTTATGCTTATCTTGTAGGTGGGAATAATCTGACTGGACCATTTCCAGATAGTTTGTTTGAGAAATGTGACGATTTGGGGGGATTGATCTTTAATATTAGCAGCAATAAAATATCTGGTCCATTTTCTGTGACAATTGGTAAGAAGTGTGGTTCTCTCAAATTCTTGGATGCATCTGGTAATCAGATGACTGGGCAGGTACCTGCTAGCTTTGGAGAGCTATTATCTCTGAATCACCTGAACCTAAGTTGGAACAAGTTTCAGTATCAAATACCTACTTCTCTCGGACAGATGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTGAATGGTTCTATACCTTCTACCTTGGGAAAGTTGCAGTCTTTGGAGTTGCTGGATCTTTCATATAACGATCTTTCGGGTGGAATTCCAATAGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTACTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTAGGAAATGTTACCACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCCTGCCATCAAATAACAACATGATTAAATGTAGTGGTGCAATTGGAAATCCTTACTTACGCCCGTGCCATATGTATTCTCTGGCCGTCCCCTCATCTGAAATGCAAGGTTCATATGGTGACCCAAGTAGTTTTGCAGCTTCACCTTCTGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCCATTGAGATAGCATCCATTACGTCTGCCTCTGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACACGAAAGTGGAACTCGAGATCTAAAGTTCTTGGCTCAATGAGAAAGGAAGTGACGGTGTTTACTGATATTGGGGTTTCCTTGACATTTGAGAATGTGGTGCGTGCTACAAGTAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCATCAGGAGTGCTGGTTGCAATTAAACGACTTGCTGTAGGTCGATTTCAAGGCGTCCAACAGTTTGATGCAGAAATTAAAACTCTTGGAAGGCTGCGCCATCCAAACCTTGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCAGGAGGTAATTTGGAAAAGTTCATCCAGGAGAGGTCTACAAGAGCAGTTGATTGGAGAATTCTTCACAAGATTGCACTGGACATAGCCCGTGCGCTTGCATATCTTCATGATCAGTGTGTACCACGAGTCCTCCACCGTGATGTGAAACCGAGCAATATACTATTAGACGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACATCTGAAACCCATGCTACCACCGGTGTGGCTGGAACTTTCGGCTACGTCGCTCCTGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGTGTGGTGCTTCTCGAGCTACTCTCAGACAAGAAAGCACTAGATCCCTCGTTTTCCTCGTACGGTAATGGTTTTAACATAGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGTGCCAAGGAATTCTTCACAGCAGGGTTATGGGAGGTAGGCCCCCATGATGATTTGGTTGAAGTATTACACTTGGCAGTTGTTTGTACAGTTGACTCTCTGTCGACTAGGCCGACGATGAAGCAAGTCGTACGACGGCTTAAGCAGCTTCAACCGCCATCATGTTAG 3429 44.04 MGSSSSSSSVIKWFTFCRPTSPILLSKLFFLFSILFFFNSHLIFADSDKSVLLQFKNALSDPSALLSSWTPTASDYCLWFGVSCDFNSRVISLNISGNGGSGNSNAFSCSDSSKFPLYGLGVRRGCVGNRGLLIGKLPPVIGNLTQLRTLSLPFHAFEGQLPREIFGLENLEVLDLEGNSVTGLLPNDFARLSKLRVLNLAFNRLTGEIPSSLSACKSLEILNLAGNQLNGTIPQFVGQLRGVYLSFNFFTGSIPSELGNNCGKLEHLDLSGNFLVSGIPSNLGNCTQLQTLLLYSNMLEEAIPAGIGMLQNLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFDPIPKINYTDGDSPTEELSDDNFNYFAGGIPETITALPKLRILWAPSATLDGRFPSQWGKCESLEMINLAGNYIYGELPSGFSVCKKLQVLDLSSNRLSGELDKNLPVPYMSLFDLSGNHFTGEIPTFCGNDCSPPKSHLNGYLNFGDASSRYLSFFATSIRDSTPFEFVGNGDLIIHNFGDNNFTGNLLSLPFPRERLGRKTIYAYLVGGNNLTGPFPDSLFEKCDDLGGLIFNISSNKISGPFSVTIGKKCGSLKFLDASGNQMTGQVPASFGELLSLNHLNLSWNKFQYQIPTSLGQMADLKYLCLAGNNLNGSIPSTLGKLQSLELLDLSYNDLSGGIPIDLVNLRGLKVLLLNNNSLSGQVPSGLGNVTTLSAFNVSFNNLSGSLPSNNNMIKCSGAIGNPYLRPCHMYSLAVPSSEMQGSYGDPSSFAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 13628017 13631445 - Lsi07G009900.1 Lsi07g00990 667412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g00990 1142 Gene3D Ribonuclease Inhibitor 553 639 IPR032675 -
Lsi07g00990 1142 CDD STKc_IRAK 869 1137 - -
Lsi07g00990 1142 Gene3D Phosphorylase Kinase; domain 1 825 938 - -
Lsi07g00990 1142 Pfam Leucine rich repeat 146 205 IPR001611 GO:0005515
Lsi07g00990 1142 Pfam Leucine rich repeat N-terminal domain 45 85 IPR013210 -
Lsi07g00990 1142 SUPERFAMILY Protein kinase-like (PK-like) 848 1134 IPR011009 -
Lsi07g00990 1142 SUPERFAMILY L domain-like 239 739 - -
Lsi07g00990 1142 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672|GO:0006468
Lsi07g00990 1142 Gene3D Ribonuclease Inhibitor 640 757 IPR032675 -
Lsi07g00990 1142 SMART LRR_typ_2 262 286 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 168 191 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 623 647 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 310 334 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 192 216 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 695 719 IPR003591 -
Lsi07g00990 1142 SMART LRR_typ_2 217 240 IPR003591 -
Lsi07g00990 1142 SMART serkin_6 863 1141 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00990 1142 ProSitePatterns Protein kinases ATP-binding region signature. 869 891 IPR017441 GO:0005524
Lsi07g00990 1142 Pfam Leucine Rich Repeat 264 286 IPR001611 GO:0005515
Lsi07g00990 1142 Pfam Leucine Rich Repeat 312 334 IPR001611 GO:0005515
Lsi07g00990 1142 PRINTS Leucine-rich repeat signature 671 684 - -
Lsi07g00990 1142 PRINTS Leucine-rich repeat signature 434 447 - -
Lsi07g00990 1142 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 26 1141 - -
Lsi07g00990 1142 Gene3D Transferase(Phosphotransferase) domain 1 939 1139 - -
Lsi07g00990 1142 Pfam Leucine Rich repeat 431 447 IPR001611 GO:0005515
Lsi07g00990 1142 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 26 1141 - -
Lsi07g00990 1142 SUPERFAMILY L domain-like 47 345 - -
Lsi07g00990 1142 Gene3D Ribonuclease Inhibitor 240 365 IPR032675 -
Lsi07g00990 1142 Gene3D Ribonuclease Inhibitor 366 538 IPR032675 -
Lsi07g00990 1142 Pfam Protein kinase domain 866 1064 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00990 1142 ProSiteProfiles Protein kinase domain profile. 863 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g00990 1142 Gene3D Ribonuclease Inhibitor 45 239 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00990 Lsi-Chr7:13628017 Lsi09g00831 Lsi-Chr9:9526594 0 dispersed
Lsi07g00990 Lsi-Chr7:13628017 Lsi05g01804 Lsi-Chr5:25311429 1.75E-134 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83796 PF00069 Pkinase 9.90E-44 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g00990 - - csv:101218045 2017.66