Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01007 ATGCAGGGAGCTTGTGGGTATGGAAATCTATTCGAGCAAGGTTATGGGCTAGCAACAGCGGCGTTAAGTACAGCATTGTTTAACAACGGTGGAACTTGTGGAGCATGCTTTGAGATAATGTGTGTGAACGACGAACACAACTGGTGCATACGAAACACAGGTACAATCAAAATAACAGCCACAAACTTTTGCCCTCCAAACTACACAAAAACACATGACATTTGGTGCAACCCACCCCAACGTCATTTTGATCTATCTCTTTACATGTTCACCAAAATAGCCCCTTATAGGGCTGGGGTCATCCCAGTCCGCTACCGTAGGACACTTTGCTACAAACAGGGCGGCCTACGGTTCGAGCTCAAAGGGAATCCTTATTGGCTTCTTGTCTTGCCCTATAATGTTGGTGGTGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTTCTACTGGATGGCTTCAAATGACAAGGAATTGGGGTCAGAATTGGCAGGTTGGTACCGATTTGGTGGGGCAGAGTTTGTCCTTTAGAGTTACTACTAGTGATGGGAAGACCATTGAGTTTGATAATGTTGTGCCAAGGTCTTGGCAGTTGGGGCAGAACTTTGAAGGAAGGTATAATTTCTAG 627 45.14 MQGACGYGNLFEQGYGLATAALSTALFNNGGTCGACFEIMCVNDEHNWCIRNTGTIKITATNFCPPNYTKTHDIWCNPPQRHFDLSLYMFTKIAPYRAGVIPVRYRRTLCYKQGGLRFELKGNPYWLLVLPYNVGGAGDVVDVKIKGSSTGWLQMTRNWGQNWQVGTDLVGQSLSFRVTTSDGKTIEFDNVVPRSWQLGQNFEGRYNF 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14544693 14545494 - Lsi07G010070.1 Lsi07g01007 667429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01007 208 Gene3D - 1 110 IPR036908 -
Lsi07g01007 208 PRINTS Expansin signature 56 66 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 114 126 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 190 206 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 14 28 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 42 53 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 126 147 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 73 90 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Lsi07g01007 208 PRINTS Expansin signature 90 103 IPR002963 GO:0009664
Lsi07g01007 208 Pfam Expansin C-terminal domain 117 193 IPR007117 -
Lsi07g01007 208 Gene3D - 115 208 IPR036749 -
Lsi07g01007 208 PANTHER EXPANSIN-A15 1 208 IPR002963 GO:0009664
Lsi07g01007 208 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 2 115 IPR007112 -
Lsi07g01007 208 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 125 204 IPR007117 -
Lsi07g01007 208 PANTHER EXPANSIN-A21-RELATED 1 208 - -
Lsi07g01007 208 SMART dpbb_1 19 105 IPR007112 -
Lsi07g01007 208 Pfam Lytic transglycolase 19 105 IPR009009 -
Lsi07g01007 208 SUPERFAMILY Barwin-like endoglucanases 1 133 IPR036908 -
Lsi07g01007 208 PRINTS Expansin/Lol pI family signature 98 114 IPR007118 GO:0005576
Lsi07g01007 208 PRINTS Expansin/Lol pI family signature 1 19 IPR007118 GO:0005576
Lsi07g01007 208 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Lsi07g01007 208 PRINTS Expansin/Lol pI family signature 152 166 IPR007118 GO:0005576
Lsi07g01007 208 PRINTS Expansin/Lol pI family signature 23 41 IPR007118 GO:0005576
Lsi07g01007 208 SUPERFAMILY PHL pollen allergen 112 203 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01007 Lsi-Chr7:14544693 Lsi04g00889 Lsi-Chr4:8841940 1.24E-87 dispersed
Lsi07g01007 Lsi-Chr7:14544693 Lsi07g01008 Lsi-Chr7:14568170 1.43E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01007 - - bhj:120077708 421.779