Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01008 ATGGGCAATTTTAACAATTTGCTTCTTTGGTTGGGGTTATTTGTGGCCATTTTTGGTCAAGCCACGGCCTCTAGGCTCATTGATCCCACTGTTAATCAAAAGATTGACACCACGTGGTACGATGCTCGTGCCACCTTCTACGGCGACATGAGGGGTGGTGAAACTATGCAGGGAGCTTGCGGGTATGGAGATCTATTCAAGCAAGGTTATGGGCTAGCAACAGCGGCGTTAAGTACGGCATTGTTTAACAACGGTGGAACTTGCGGAGCATGCTTTGAGATAATGTGTGTGAACAACGGACACAATTGGTGCATACCAAACGCAGGTACAATCAAAGTAACAGCCACAAACTTCTGCCCTCCAAACTACACAAAAACACAAGACATTTGGTGCAACCCACCCCAACGTCATTTTGACCTATCTCTTTACATGTTCACCAAAATGGCTCCTTATAGGGCAGGGGTCATCTCAGTCCGCTACCGTAGGACGCTTTGCCACAAACAAGGTGGCCTACGATTCGAGCTCAAAGGAAATCCTTATTGGCTTCTTGTCTTGCCCTACAATGTTAGTGGTGCTGGTGATGTTGTTGATGTTAAGATTAAAGGCTCTTCTACTGGATGGCTTCAAATGAAAAGGAATTGGGGTCAAAATTGGCAGGTTGGTACCGATTTGATGGGGCAGAGTTTGTCCTTTAGAGTTACTACTAGTGATGGGAAGACCATTGAGTTTGATAATGTTGTGCCAAGCTCTTGGCAGTTAGGGCAGAACTTTGAAGGAAAGTATAATTTCTAG 792 45.33 MGNFNNLLLWLGLFVAIFGQATASRLIDPTVNQKIDTTWYDARATFYGDMRGGETMQGACGYGDLFKQGYGLATAALSTALFNNGGTCGACFEIMCVNNGHNWCIPNAGTIKVTATNFCPPNYTKTQDIWCNPPQRHFDLSLYMFTKMAPYRAGVISVRYRRTLCHKQGGLRFELKGNPYWLLVLPYNVSGAGDVVDVKIKGSSTGWLQMKRNWGQNWQVGTDLMGQSLSFRVTTSDGKTIEFDNVVPSSWQLGQNFEGKYNF 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 14568170 14569065 - Lsi07G010080.1 Lsi07g01008 667430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01008 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 170 IPR007112 -
Lsi07g01008 263 Pfam Expansin C-terminal domain 172 248 IPR007117 -
Lsi07g01008 263 PRINTS Expansin signature 169 181 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 216 237 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 128 145 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 145 158 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 245 261 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 97 108 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 111 121 IPR002963 GO:0009664
Lsi07g01008 263 PRINTS Expansin signature 69 83 IPR002963 GO:0009664
Lsi07g01008 263 SMART dpbb_1 74 160 IPR007112 -
Lsi07g01008 263 Gene3D - 170 263 IPR036749 -
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 207 221 IPR007118 GO:0005576
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 153 169 IPR007118 GO:0005576
Lsi07g01008 263 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Lsi07g01008 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 180 259 IPR007117 -
Lsi07g01008 263 PANTHER EXPANSIN-A21-RELATED 31 263 - -
Lsi07g01008 263 SUPERFAMILY PHL pollen allergen 167 258 IPR036749 -
Lsi07g01008 263 PANTHER EXPANSIN-A15 31 263 IPR002963 GO:0009664
Lsi07g01008 263 SUPERFAMILY Barwin-like endoglucanases 13 188 IPR036908 -
Lsi07g01008 263 Pfam Lytic transglycolase 74 160 IPR009009 -
Lsi07g01008 263 Gene3D - 27 166 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01008 Lsi-Chr7:14568170 Lsi04g00889 Lsi-Chr4:8841940 7.76E-90 dispersed
Lsi07g01007 Lsi-Chr7:14544693 Lsi07g01008 Lsi-Chr7:14568170 1.43E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01008 - - bhj:120077708 484.567