Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01030 ATGCCCCGAGATCCGCGTAAGAAAGAGAAGCTTTTCTCAGCGCCGACACATGTATTTCTTTCAGACAAACCCTTCCCCACAAAACGTGAATGTATCATTCAAATCAACGCGCTATCTCCCCAACCTCCGCCTTTAAAGTTCCCTAACCTTCCCACCGGCCCTGCCTTCATTTATTTAATTTCCTCTCCTCCTAAACTAAGGCAAACCCGAATTGGTAGAGGCAGCTCAATAATTCCATCTTTAATTTTTTGCTGCTTCTTCTTCATCCTCTTGTTTCCTATGCTTCCGGCTACCTCTCCACCGGATCTTGTGCAGACACAGTGTTTGACTGTACCTTCCTCCCAGTTCTCTAACTCAATCCTCTCCACCATCGATGTTGTACAACAAGTTATGGCTATTTTCTCTCCATTCACTAAATTACTGGGTGATTTACGGCTTTCCACTGCCATTTCCGACTGTCTTGATTTGCTTGACTCTTCTGCTGAGCAGTTGAGTTGGTCCCTCTCCGCCACCCAAAATCCCAAGGTGAAAGACCATAGCACCGGAGATTTGAGTTCTGATCTGAAGACATGGCTGAGCGCTGCAGTGGTTAATCCAGAAACATGCATGGATGGATTTGAGGGTACCAATAGCATTATCAAAGGTCTAGTATCTGGAAGCATCAACCAGTTAACTTCACAGCTCTACGACCTTCTTTCCATGGTGAAATCAAACCCCAATCAGCCGGCTGAGTTTCCTTCATGGGTGAAATCTGAGGACCGAAACCTGCTGCAACTAAATGATTTGGCCGCCGATGCCACTGTGGCCGCCGATGGGACTGGAGATTTCACCAATGTGATGGATGCTGTACTAGCAGCCCCTGACAATAGCTTACAACGTTATGTCATATACATAAAGAAGGGTGTGTATTTTGAGAACGTGGAGATCAAGAAGAAGAAGTGGAATCTAATGATGATTGGAGATGGAATTAATGACACCATCATATCAGGTAATCGGAATTTTATTGACGGTTGGACTACATTCCGTTCAGCGACATTTGCTGTAAGTGGAAGAGGATTCATAGCGCGAGACATAACATTCGAGAATACTGCTGGGCCACAGAAACATCAAGCAGTAGCACTTAGATCCGACTCGGATCTGTCTGTATTTTTTAGATGTCGTATTAGAGGTTATCAAGACACTCTATATACACACACCATGCGTCAATTCTACCGCGAGTGCCAAATCAGTGGCACCGTTGATTTTCTGTTCGGCGATGCCACCGTCGTTTTCCAAAATTGCAGCATCCTCGCGAAGAAGGGTCTTCCCAATCAGAAAAACACCATCACTGCTCAGGGCCGGAAAGATCCAAACCAACCCACCGGCTTCTCCATTCAATTTTGCAACATCTCTGCAGATTCAGATCTTAAACCTTGGGTTAACACCACAGCTACGTACCTTGGAAGACCATGGAAGGAATATTCTAGAACCATTATCATGCAATCATATATGAGCGACGCCATTAGGCCAGAAGGTTGGCTTGAGTGGAATGCCGATTTTGCATTGAATACACTATACTACGCTGAGTTTATGAACTATGGGCCGGGGGCGGGATTGGCAAAGCGTGTCAATTGGCCTGGTTACCACCGACTTAATCAAACTAGTGAAGCTACTAACTTCACCGTGGCTCAATTCATTGAAGGGAACATGTGGTTGCCATCTACAGGTGTCAAATACACTGCAGGATTGGGAGCTAATTAA 1740 45.4 MPRDPRKKEKLFSAPTHVFLSDKPFPTKRECIIQINALSPQPPPLKFPNLPTGPAFIYLISSPPKLRQTRIGRGSSIIPSLIFCCFFFILLFPMLPATSPPDLVQTQCLTVPSSQFSNSILSTIDVVQQVMAIFSPFTKLLGDLRLSTAISDCLDLLDSSAEQLSWSLSATQNPKVKDHSTGDLSSDLKTWLSAAVVNPETCMDGFEGTNSIIKGLVSGSINQLTSQLYDLLSMVKSNPNQPAEFPSWVKSEDRNLLQLNDLAADATVAADGTGDFTNVMDAVLAAPDNSLQRYVIYIKKGVYFENVEIKKKKWNLMMIGDGINDTIISGNRNFIDGWTTFRSATFAVSGRGFIARDITFENTAGPQKHQAVALRSDSDLSVFFRCRIRGYQDTLYTHTMRQFYRECQISGTVDFLFGDATVVFQNCSILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFCNISADSDLKPWVNTTATYLGRPWKEYSRTIIMQSYMSDAIRPEGWLEWNADFALNTLYYAEFMNYGPGAGLAKRVNWPGYHRLNQTSEATNFTVAQFIEGNMWLPSTGVKYTAGLGAN 579
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15624554 15628174 + Lsi07G010300.1 Lsi07g01030 667452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01030 579 SUPERFAMILY Pectin lyase-like 263 575 IPR011050 -
Lsi07g01030 579 CDD PMEI-like_4 94 239 - -
Lsi07g01030 579 Pfam Plant invertase/pectin methylesterase inhibitor 147 227 IPR006501 GO:0004857
Lsi07g01030 579 Pfam Pectinesterase 265 562 IPR000070 GO:0030599|GO:0042545
Lsi07g01030 579 SMART PMEI_2 99 231 IPR006501 GO:0004857
Lsi07g01030 579 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 110 237 - -
Lsi07g01030 579 PANTHER PECTINESTERASE 110 237 - -
Lsi07g01030 579 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 243 576 - -
Lsi07g01030 579 PANTHER PECTINESTERASE 243 576 - -
Lsi07g01030 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 120 234 IPR035513 -
Lsi07g01030 579 Gene3D - 259 576 IPR012334 -
Lsi07g01030 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 102 237 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01030 Lsi-Chr7:15624554 Lsi09g00673 Lsi-Chr9:7603919 1.32E-141 dispersed
Lsi07g01030 Lsi-Chr7:15624554 Lsi06g00089 Lsi-Chr6:897490 6.51E-119 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01030 K01051 - csv:116402691 920.998