Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01035 ATGTCGTCGAACCATTCGGATTTGGATTCTTCAGCTTTTGATACTCAAATTTCGTTCAATCCGATTGCTCCCTTGGATCATCCCCCCTCCACCTCCTCCACCCTCTCTGAATCTGAAGAAAATCCCTGCACATCGTCTTCACCTTCCTCCACTTCACCTCCGATTAACTTACCTCTCTCTTGGCCTCCCGATGCCACCCTTTCCCTCCAATGGATACACCATCTCATCGCTGCCTTCGACTGGTCTTCCAAAAACTTACCTCCATCCGAGTTTCCTTCAGTCCTTCCCGTCTCCGTTTTCGACACTCTAATCCTCACCGCTTCTAAAATCCTCCACAAAGAACCCAACTGCCTCAGAATCCTCGAAGACTCAGCCGCCAGCAACGACTCGACTGTAGTCGTCGTCGGAGACGTCCATGGCCAATTTCATGATCTCCTCTTTCTCCTGCAGGATGCTGGTTTTCCTTCTGAAAACCGTTTCTTTGTCTTCAATGGGGATTACGTCGACAGAGGGGCTTGGGGTCTTGAAACTTTTTTGCTCTTATTGGCTTGGAAGGTGTTTATGCCACATCGAGTATTTCTTCTTCGTGGAAACCACGAGTCCAAGTACTGCACATCCGTTTATGGTTTTGAGAAGGAGGTGCTAACCAAGTACGGAGACAAAGGTAAGCATGTCTATCGGAAGTGTTTGGGGTGTTTCGAAGGGCTGCCTTTGGCCTCCATTATTGCTGGATGTGTATATACGGCTCATGGAGGACTTTTCCGCAGCATATCAGTTCCTTCGTCCAAAAGGTCGAAAGGGAAAAAAAATCGTAGGATAATCTTAAATCCTGAAGCCAATGGGTTATCTCTTGGTTCTTTGGAGGAACTATCCAAAGCCAGAAGATCGGTTCTTGATCCCCCATGGGAAGGCTTGAATTTAATTCCGGGCGATGTGTTGTGGTCTGATCCCTCGATGAATCCCGGTCTCTCCCCAAATAGAGAGAGAGGCATAGGTCTCTTGTGGGGTCCTGATTGCACTGAAGAATTCTTGAAAAAATTTGATCTGAAGCTAATTATTAGATCCCATGAAGGTCCTGATGCTAGAGAAAAGAGACCCGGTCTTGCAGGAATGGATCAGGGTTACACGATAGATCATGTTGTAGATTCAGGGAAACTGATTACTTTGTTTAGTGCTCCAGACTATCCACAATTTCAGGCCACTGAGGAGAGATACAAAAACAAAGGTGCATATATTGTTCTAGAACCTCCAAATTTTGATGTTCCAATCATTCATAGTTTTGATGCCATTACTCCACGACCGAAGGTCAATGCATATTACGATTTTGAGGATGTAATTGATTCTGACGAGGAATTAGACATGGCTTCAATGGCAACTGATCCATGA 1386 45.67 MSSNHSDLDSSAFDTQISFNPIAPLDHPPSTSSTLSESEENPCTSSSPSSTSPPINLPLSWPPDATLSLQWIHHLIAAFDWSSKNLPPSEFPSVLPVSVFDTLILTASKILHKEPNCLRILEDSAASNDSTVVVVGDVHGQFHDLLFLLQDAGFPSENRFFVFNGDYVDRGAWGLETFLLLLAWKVFMPHRVFLLRGNHESKYCTSVYGFEKEVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGCVYTAHGGLFRSISVPSSKRSKGKKNRRIILNPEANGLSLGSLEELSKARRSVLDPPWEGLNLIPGDVLWSDPSMNPGLSPNRERGIGLLWGPDCTEEFLKKFDLKLIIRSHEGPDAREKRPGLAGMDQGYTIDHVVDSGKLITLFSAPDYPQFQATEERYKNKGAYIVLEPPNFDVPIIHSFDAITPRPKVNAYYDFEDVIDSDEELDMASMATDP 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15688850 15704388 - Lsi07G010350.1 Lsi07g01035 667457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01035 461 MobiDBLite consensus disorder prediction 25 54 - -
Lsi07g01035 461 SUPERFAMILY Metallo-dependent phosphatases 91 433 IPR029052 -
Lsi07g01035 461 SMART pp2a_7 95 431 IPR006186 GO:0016787
Lsi07g01035 461 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 39 458 - -
Lsi07g01035 461 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 7 39 458 - -
Lsi07g01035 461 Gene3D - 90 452 IPR029052 -
Lsi07g01035 461 ProSitePatterns Serine/threonine specific protein phosphatases signature. 195 200 IPR006186 GO:0016787
Lsi07g01035 461 Pfam Calcineurin-like phosphoesterase 131 359 IPR004843 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 194 218 IPR006186 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 131 158 IPR006186 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 231 257 IPR006186 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 385 401 IPR006186 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 161 188 IPR006186 GO:0016787
Lsi07g01035 461 PRINTS Serine/threonine phosphatase family signature 291 318 IPR006186 GO:0016787
Lsi07g01035 461 MobiDBLite consensus disorder prediction 19 57 - -
Lsi07g01035 461 CDD MPP_PP7 61 441 IPR041754 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g01656 Lsi-Chr2:22349892 Lsi07g01035 Lsi-Chr7:15688850 3.50E-133 dispersed
Lsi07g01035 Lsi-Chr7:15688850 Lsi10g01550 Lsi-Chr10:19925439 2.16E-52 dispersed
Lsi07g01035 Lsi-Chr7:15688850 Lsi11g01649 Lsi-Chr11:24801333 3.78E-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01035 K04460 - csv:116402529 826.239