Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01038 | ATGATAACCAAAGTATGGAGTGGCCCACCTCCCAAGTTGTCCTCTTCTCCTCTTGGCTTTACCTCTGATAACAAAACTCTCAAAGATTTTCCTTTTCCTAAAGAAAACACCACAAACCCTCAATACACTCACTACCTTCTCTTCACAAAGTTGTGTGTCATGACTCGCTATATCAGAGCTCTTGCCGCCAATACTTCGTCGGCGCCTCCGCCGGAGGCGGTGGCTTTGGAGTCGGACTTCGTGGTGATTCTGGCGGCGCTGCTGTGTGCCCTAATTTGTATGGTAGGGCTGATAGCGGTGGCTCGGTGTGCGTGGCTCCGCCGTGGGGGGGGAAGTGCAGGAAATCAGGCGTCGGCGAATAGGGGACTGAAGAAGAAGATCCTGCAGTCGCTTCCGAAATTCAGGTACAAGTCGAGCGGGGGAGAGGGGAAAATTGCGGCGGAATGTGCGATCTGCCTGGCGGAGTTCTTGGAAGGGGAGGAGATCCGGCAGCTGCCGCAGTGTGGGCATTGCTTCCACGTCAGCTGCGTAGACACGTGGCTAGGGTCCCATTCCTCATGCCCTTCTTGCCGTCAGATTCTGGTAGGGGCCAGATGCCAGAAGTGCGGGCAGTTTCCGGCCGTGGGGCAAGGCGGCGCTGCTCACAACAACGAGGAGGAGGAGGAGGAAGTGGAAGATAACAACAGGGGTTTGGGATTTTTGCCTTGA | 708 | 55.51 | MITKVWSGPPPKLSSSPLGFTSDNKTLKDFPFPKENTTNPQYTHYLLFTKLCVMTRYIRALAANTSSAPPPEAVALESDFVVILAALLCALICMVGLIAVARCAWLRRGGGSAGNQASANRGLKKKILQSLPKFRYKSSGGEGKIAAECAICLAEFLEGEEIRQLPQCGHCFHVSCVDTWLGSHSSCPSCRQILVGARCQKCGQFPAVGQGGAAHNNEEEEEEVEDNNRGLGFLP | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 15743058 | 15744224 | - | Lsi07G010380.1 | Lsi07g01038 | 667460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01038 | 235 | MobiDBLite | consensus disorder prediction | 212 | 235 | - | - | |
| Lsi07g01038 | 235 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lsi07g01038 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 111 | 195 | IPR013083 | - | |
| Lsi07g01038 | 235 | Pfam | Ring finger domain | 148 | 191 | IPR001841 | - | |
| Lsi07g01038 | 235 | SMART | ring_2 | 149 | 190 | IPR001841 | - | |
| Lsi07g01038 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 149 | 191 | IPR001841 | - | |
| Lsi07g01038 | 235 | SUPERFAMILY | RING/U-box | 132 | 195 | - | - | |
| Lsi07g01038 | 235 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED | 54 | 221 | - | - | |
| Lsi07g01038 | 235 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 54 | 221 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00365 | Lsi-Chr2:3123066 | Lsi07g01038 | Lsi-Chr7:15743058 | 1.48E-13 | dispersed | |
| Lsi07g01038 | Lsi-Chr7:15743058 | Lsi10g00710 | Lsi-Chr10:9926794 | 9.50E-31 | dispersed | |
| Lsi03g00454 | Lsi-Chr3:5147493 | Lsi07g01038 | Lsi-Chr7:15743058 | 1.19E-12 | transposed | |
| Lsi04g01830 | Lsi-Chr4:25437672 | Lsi07g01038 | Lsi-Chr7:15743058 | 2.49E-56 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01038 | - | - | csv:116402645 | 300.441 |