Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01046 ATGCAAACTGTACCCTGCATATTAGGGGTTAATTTATCAGATGTAGATCTTCTGGAGTTTCTTCATCAGCTTGCTGATACAGATGGCTCATCAACAATGCCACCATCCGTACTTCGAGTTCTTAATTCAAAGGCCTGCAGAGGTGCAATTATGTTTGGAGACTCTTTGTTACCTTCAGAGTGCTCCCTCATTGTTGAAGAACTGAAGCAGACTTCTCTGTGTTTCCAATGTGCCCATGGACGGCCAACGACAGTTCCTCTTGTGAACTTGGAGGCATTGCATAAGCAGATAAAGGAGCTGGAAATACTGGGCAAAAGTGGTTCAAATGGAACATGGAATGGTCTGGGACAACACGAGCTGAGCATAGAAAGGATGTTGCAGCGCTTGAGTTCGGCCGAAAGTTTATAG 408 44.85 MQTVPCILGVNLSDVDLLEFLHQLADTDGSSTMPPSVLRVLNSKACRGAIMFGDSLLPSECSLIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIKELEILGKSGSNGTWNGLGQHELSIERMLQRLSSAESL 135
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15853078 15858005 + Lsi07G010460.1 Lsi07g01046 667468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01046 135 SUPERFAMILY DNA mismatch repair protein MutL 4 87 IPR037198 -
Lsi07g01046 135 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 2 92 IPR038973 GO:0006298|GO:0016887|GO:0032300|GO:0140664
Lsi07g01046 135 Gene3D - 13 99 IPR042120 -
Lsi07g01046 135 PANTHER DNA MISMATCH REPAIR PROTEIN MLH3-RELATED 2 92 IPR028830 GO:0006298
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01046 K08739 MLH3; DNA mismatch repair protein MLH3 - csv:101213777 253.447
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1201 . . . . . . . Bma15g00886 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0874 . . . . . . . Blo06g00254 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01046 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004629 1 6 2 1 0 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 3 0 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01046 Lsi_Chr07 FPKM 10.612968 12.49565 13.691317 13.118274 152.978088 137.346558 139.421585 3.373471 3.25247 3.392936