Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01059 | ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCACCAGAACCCTCCTCTGCGAGACGATCATCTCCATCATCTTACTGGAACAACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCTACCATTTGCGAGCAGCTCGTTGAGATGCACAAAACTCTCACTGCTCATCAGGATCTTACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACGCCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACACCACCCGCTTATGGCGAATCAGAAGTGGAGACAGAAGTTGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGACGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTACCTGGATCCAAATGCCAACAAAGCTGATACTTTGTTTCCTTCGAATGGAAGTTTAAAAACTGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGACAGGAAAGATTGAAACACCAGAGAACTACAGTATATACCAGCAAGCAGAAGGCTACAGCATGACTGAACGACCATGA | 840 | 46.19 | MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTPPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHYLDPNANKADTLFPSNGSLKTARSFSQMSFYEAGNEQLTGKIETPENYSIYQQAEGYSMTERP | 279 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 15961952 | 15964421 | + | Lsi07G010590.1 | Lsi07g01059 | 667481 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01059 | 279 | MobiDBLite | consensus disorder prediction | 157 | 202 | - | - | |
| Lsi07g01059 | 279 | CDD | homeodomain | 100 | 162 | IPR001356 | GO:0003677 | |
| Lsi07g01059 | 279 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Lsi07g01059 | 279 | Pfam | Homeodomain | 100 | 160 | IPR001356 | GO:0003677 | |
| Lsi07g01059 | 279 | PANTHER | - | 2 | 276 | - | - | |
| Lsi07g01059 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 96 | 161 | IPR001356 | GO:0003677 | |
| Lsi07g01059 | 279 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 2 | 276 | IPR044559 | GO:0003700 | |
| Lsi07g01059 | 279 | SMART | HOX_1 | 98 | 165 | IPR001356 | GO:0003677 | |
| Lsi07g01059 | 279 | SUPERFAMILY | Homeodomain-like | 96 | 164 | IPR009057 | - | |
| Lsi07g01059 | 279 | MobiDBLite | consensus disorder prediction | 175 | 190 | - | - | |
| Lsi07g01059 | 279 | Gene3D | - | 102 | 166 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi04g01814 | Lsi-Chr4:25353981 | Lsi07g01059 | Lsi-Chr7:15961952 | 1.45E-92 | dispersed | |
| Lsi06g01287 | Lsi-Chr6:23429509 | Lsi07g01059 | Lsi-Chr7:15961952 | 3.70E-13 | dispersed | |
| Lsi07g01059 | Lsi-Chr7:15961952 | Lsi10g01325 | Lsi-Chr10:17468044 | 3.95E-13 | dispersed | |
| Lsi07g01059 | Lsi-Chr7:15961952 | Lsi02g00230 | Lsi-Chr2:1934707 | 1.03E-13 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 25667 | PF00046 | Homeodomain | 8.90E-19 | CL0123 | Lsi | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01059 | - | - | csv:101203410 | 544.273 |