Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01059 ATGATGGAGTGGGAAAAGCCTGAGCAGCAAAATCCTTACCACCACCAGAACCCTCCTCTGCGAGACGATCATCTCCATCATCTTACTGGAACAACCGCCGGCGCTCTCTACGTCAAAGTCATGACCGACGAGCAATTGGAGACTCTTCGCAAGCAAATTGCTGTTTACGCTACCATTTGCGAGCAGCTCGTTGAGATGCACAAAACTCTCACTGCTCATCAGGATCTTACAGGAATGAGGTTGGGTAATATGTACTGTGAGCCATTGATGACATCTTCCAGCCACAAAATCACTTCTAGACAGCGATGGACTCCGACGCCTGTGCAACTTCAGATCTTAGAGCGTATATTTGAGCAAGGGAATGGAACTCCCAGCAAACAAAAGATCAAAGAGATAACCTCTGAACTGGGTCAGCATGGCCAAATTTCTGAATCTAATGTCTATAACTGGTTCCAAAACAGGCGTGCTCGATCGAAGAGGAAGCAGCAAAGTACACCACCCGCTTATGGCGAATCAGAAGTGGAGACAGAAGTTGAGTCACCGAAAGATAAGAAGACGAAACCTGTGGATTTTCAAACTCATCAATCCTCTGCACCTTTGGGGGACGACATGTGCTTCCAGAGTCCTGAGATGAGTTCTGAACTGCATTACCTGGATCCAAATGCCAACAAAGCTGATACTTTGTTTCCTTCGAATGGAAGTTTAAAAACTGCGAGAAGTTTCAGCCAGATGTCTTTTTATGAGGCAGGGAATGAGCAGCTGACAGGAAAGATTGAAACACCAGAGAACTACAGTATATACCAGCAAGCAGAAGGCTACAGCATGACTGAACGACCATGA 840 46.19 MMEWEKPEQQNPYHHQNPPLRDDHLHHLTGTTAGALYVKVMTDEQLETLRKQIAVYATICEQLVEMHKTLTAHQDLTGMRLGNMYCEPLMTSSSHKITSRQRWTPTPVQLQILERIFEQGNGTPSKQKIKEITSELGQHGQISESNVYNWFQNRRARSKRKQQSTPPAYGESEVETEVESPKDKKTKPVDFQTHQSSAPLGDDMCFQSPEMSSELHYLDPNANKADTLFPSNGSLKTARSFSQMSFYEAGNEQLTGKIETPENYSIYQQAEGYSMTERP 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15961952 15964421 + Lsi07G010590.1 Lsi07g01059 667481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01059 279 MobiDBLite consensus disorder prediction 157 202 - -
Lsi07g01059 279 CDD homeodomain 100 162 IPR001356 GO:0003677
Lsi07g01059 279 MobiDBLite consensus disorder prediction 1 26 - -
Lsi07g01059 279 Pfam Homeodomain 100 160 IPR001356 GO:0003677
Lsi07g01059 279 PANTHER - 2 276 - -
Lsi07g01059 279 ProSiteProfiles 'Homeobox' domain profile. 96 161 IPR001356 GO:0003677
Lsi07g01059 279 PANTHER WUSCHEL-RELATED HOMEOBOX 13 2 276 IPR044559 GO:0003700
Lsi07g01059 279 SMART HOX_1 98 165 IPR001356 GO:0003677
Lsi07g01059 279 SUPERFAMILY Homeodomain-like 96 164 IPR009057 -
Lsi07g01059 279 MobiDBLite consensus disorder prediction 175 190 - -
Lsi07g01059 279 Gene3D - 102 166 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01059 - - - csv:101203410 544.273
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g01814 Lsi-Chr4:25353981 Lsi07g01059 Lsi-Chr7:15961952 1.45E-92 dispersed
Lsi06g01287 Lsi-Chr6:23429509 Lsi07g01059 Lsi-Chr7:15961952 3.70E-13 dispersed
Lsi07g01059 Lsi-Chr7:15961952 Lsi10g01325 Lsi-Chr10:17468044 3.95E-13 dispersed
Lsi07g01059 Lsi-Chr7:15961952 Lsi02g00230 Lsi-Chr2:1934707 1.03E-13 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi02g00230 CCT,ECH 1 196 Wox Gene Family AT3G18010 54.9 2.5e-47 186.4
Lsi06g01287 CCT,ECH 20 187 Wox Gene Family AT3G18010 57.8 3.1e-42 169.5
Lsi08g01489 . 125 278 Wox Gene Family AT1G46480 57.7 3.6e-40 161.8
Lsi03g01692 . 25 257 Wox Gene Family AT3G03660 52.1 4.7e-47 185.3
Lsi07g01059 . 1 276 Wox Gene Family AT4G35550 51.2 8.5e-72 267.3
Lsi04g01814 . 1 189 Wox Gene Family AT4G35550 62.9 4.5e-57 218.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25667 PF00046 Homeodomain 8.90E-19 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01059 Lsi_Chr07 FPKM 18.912176 21.341351 40.286098 37.509968 66.374886 64.753281 67.967201 40.580101 45.938019 49.504967