Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01060 ATGATAGGAGCTGCGAACAATACGGGGTTGGAGATGTTAATGAACATGTTTGGTGGACTTGGTGCTGGTAGTCTAGCCGTGCCCAACAGATCCGATGTACCGCCGGAAGAACTGTATTCTACGCAGCTCACACAGCTGCAAGAAATGGGATTCATTGACAGACAGGAGAACATACGAGCACTGATTGCCACTGCAGGAAATGTCCACGCCGCAGTTGAACGATTACTGGGGAATTTGGGGCAGTAG 246 50.0 MIGAANNTGLEMLMNMFGGLGAGSLAVPNRSDVPPEELYSTQLTQLQEMGFIDRQENIRALIATAGNVHAAVERLLGNLGQ 81
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15965444 15966584 - Lsi07G010600.1 Lsi07g01060 667482

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01060 81 CDD UBA_PLICs 39 77 - -
Lsi07g01060 81 Gene3D - 21 80 - -
Lsi07g01060 81 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 3 81 - -
Lsi07g01060 81 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 37 78 IPR015940 -
Lsi07g01060 81 Pfam UBA/TS-N domain 39 75 IPR015940 -
Lsi07g01060 81 SUPERFAMILY UBA-like 35 77 IPR009060 GO:0005515
Lsi07g01060 81 SMART uba_6 39 77 IPR015940 -
Lsi07g01060 81 PANTHER UBIQUILIN 3 81 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01060 K04523 UBQLN, DSK2; ubiquilin - csv:101203166 152.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01060 Lsi-Chr7:15965444 Lsi11g01279 Lsi-Chr11:21405224 1.83E-30 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1184 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0890 Cone12ag0861 . . . . . . . . . . . . . . . . . Cma16g01271 . . . . . . . . . . . . . . . . . . . Lsi07g01060 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0022376 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01060 Lsi_Chr07 FPKM 22.308207 27.349577 32.096008 33.925457 30.986162 31.985306 32.38969 37.891228 39.482647 40.180267