Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01061 ATGGGTGGTGGCGATGGAGCTGTGTCCGCTGCCAGCGACACGACCTCTGCCGATGCAGTCAAAGTCAACGTCAACATTCGATGCTCCAATGGTTCCAAGTTTTCTGTTCTCGTTAACCTCGATTCTACCGTTGGATCCTTTAAATCGATCCTTGCCGACCAGAGCGAGGTTCCCGCCGATCAGCAGCGCCTGATTTATAAGGGTCGGATTTTGAAAGATGATCAAACCCTACAAAGCTACGGGTTAGAGGCAGATCACACTGTCCATTTGGTTCGTGGATCGGCACCTGCTGCCTCACCAACCAATCCTGCAACTGCTTCCAATGCCGGCGGTCCGAACACTACTTCGAGTAACGCAAGAAGTGTTGGATCAAATGAAGGTGGAGCACTGGGGGGAGGACTTGGTTTGGATGCTTCTCTATTTCCTGGGCTTGGTTTGGATGGGCTTGGTGCCACTGGTGGATTGTTTGGGGCTGGCCTTCCCGATTTTGAACAGGTGCAGCAGCAACTGACTCGCAATCCAAACATCATGAGAGAAATAATGAATATGCCCGCCATACAAAACATCATGAATAATCCAGATATCATGAGGAACTTGATAATGAACAATCCTCAAATGCGTGAAATAATGGATCGTAATCCTGAGCTCGCGCACATTCTCAATGATCCCAGTACTCTCCGACAGACGCTTGAAACTGCAAGAAATCCCGAGCTTATGCGGGAGATGATGCGGAATACTGATAGAGCAATGAGCAACATTGAGTCTTCCCCTGAAGGTTTTAATATGCTTAGGCGCATGTACGAAACTGTTCAAGAGCCATTTCTAAATGCAACAACTATGTCTGGAACTGCTGGAAATGATGGCTCGAACCCCTTCGCTGCACTTTTGGGGACGGGTGGGGATGTGACCAATAATGCGACATCCAATTTATCTACTACTACTTCTGATACGACTAATGGATCTCCTTCTCCAAATACAAATCCACTTCCAAACCCATGGTCCCCTGCTAGCACTGGTGGTACCCAAACTAACTCTGCAAGGTCAAATCCCACTCCAAATGTTAGTGCTCAAGTTCCCACTGGTTTAGCTGGGCTTGGTCTTCCAAATCTTGAGGGCATGTTGGGTGCAACACCAGATGCCGCTGGTTTGAATCAGTTGATGCAAAACCCAGCTATTTCACAAATGATGCAAAGTGTTATGTCAAACCCTCAATATATGAACCAGATCCTTGGTCTCAACCCTCAATTGCGCGGCTTGCTTGATTCCAATCCTCAACTCAGAGAGATGATGCAGAATCCTGAATTTTTACGTCAGTTGACCTCCCCTGATACAATGCAGCAAATGTTTACTATGCAGCAACAACTTCTGTCACAGCTTGGTCGCCAACCCACCTTGAAGATTGCTTGGAGTGGCTTGGATCAAAGTAAGCTTGCCCCCTTTGGATATTTGAGTACCACTCCAGCTGTTGAGGCGTCGTTCCACCTTTCAATAATAGGCTCCCAAAATGCATATGAAAAAGGCTTACCATTCAAGGGAACCAAGGTCAGACCGGTGGAGGCACAGGTAATCAACTCTATAAATAGGTTGACAAGTATTGATGTTGTGCTACCCTACCATTATGATTGGCATGATGAAGTCGGATATGTATACATTCCAGAAGCTTCATCACGTGAAACACAAATTGATTGGTGGCTTTTGATGTTTAGGGTGACTTAG 1716 46.62 MGGGDGAVSAASDTTSADAVKVNVNIRCSNGSKFSVLVNLDSTVGSFKSILADQSEVPADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGSAPAASPTNPATASNAGGPNTTSSNARSVGSNEGGALGGGLGLDASLFPGLGLDGLGATGGLFGAGLPDFEQVQQQLTRNPNIMREIMNMPAIQNIMNNPDIMRNLIMNNPQMREIMDRNPELAHILNDPSTLRQTLETARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYETVQEPFLNATTMSGTAGNDGSNPFAALLGTGGDVTNNATSNLSTTTSDTTNGSPSPNTNPLPNPWSPASTGGTQTNSARSNPTPNVSAQVPTGLAGLGLPNLEGMLGATPDAAGLNQLMQNPAISQMMQSVMSNPQYMNQILGLNPQLRGLLDSNPQLREMMQNPEFLRQLTSPDTMQQMFTMQQQLLSQLGRQPTLKIAWSGLDQSKLAPFGYLSTTPAVEASFHLSIIGSQNAYEKGLPFKGTKVRPVEAQVINSINRLTSIDVVLPYHYDWHDEVGYVYIPEASSRETQIDWWLLMFRVT 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15966748 15974092 - Lsi07G010610.1 Lsi07g01061 667483

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01061 571 Pfam Ubiquitin family 24 91 IPR000626 GO:0005515
Lsi07g01061 571 Gene3D - 10 107 - -
Lsi07g01061 571 SUPERFAMILY Ubiquitin-like 9 109 IPR029071 -
Lsi07g01061 571 CDD Ubl_Dsk2p_like 22 94 - -
Lsi07g01061 571 MobiDBLite consensus disorder prediction 94 124 - -
Lsi07g01061 571 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 9 464 - -
Lsi07g01061 571 PRINTS Ubiquitin signature 53 73 IPR019956 -
Lsi07g01061 571 PRINTS Ubiquitin signature 74 95 IPR019956 -
Lsi07g01061 571 ProSiteProfiles Ubiquitin domain profile. 22 91 IPR000626 GO:0005515
Lsi07g01061 571 ProSitePatterns Ubiquitin domain signature. 48 73 IPR019954 -
Lsi07g01061 571 MobiDBLite consensus disorder prediction 98 124 - -
Lsi07g01061 571 MobiDBLite consensus disorder prediction 300 324 - -
Lsi07g01061 571 SMART CBM 153 190 IPR006636 -
Lsi07g01061 571 SMART CBM 203 242 IPR006636 -
Lsi07g01061 571 SMART CBM 367 409 IPR006636 -
Lsi07g01061 571 SMART CBM 413 448 IPR006636 -
Lsi07g01061 571 SMART ubq_7 22 93 IPR000626 GO:0005515
Lsi07g01061 571 PANTHER UBIQUILIN 9 464 - -
Lsi07g01061 571 Gene3D - 198 255 - -
Lsi07g01061 571 MobiDBLite consensus disorder prediction 332 358 - -
Lsi07g01061 571 MobiDBLite consensus disorder prediction 280 360 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01061 K04523 UBQLN, DSK2; ubiquilin - csv:101203166 776.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01061 Lsi-Chr7:15966748 Lsi11g01279 Lsi-Chr11:21405224 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1183 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01061 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013056 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01061 Lsi_Chr07 FPKM 35.602356 36.835411 43.108639 46.041447 41.638535 36.436337 43.388794 32.652111 32.609116 33.340118