Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01062 GCACCGTGTTCCATACCTGTAGATGCAGCCAACAACGACATGCCCAAATGGAATAAAATTAATGGACGGGCTTTTGGGATCACTCGTTCAATGATCCCATCTTCATCATGGATAGTCTTGAAAGTTCTTCATAATAAAGGGTTTGAAGCCTATTTGGTGGGTGGATGTGTGAGAGACTTACTCCTAAACAGAGTACCAAAAGACTTTGATGTGATTACCACAGCTGGACTTAAACAGATCTGCAAACTATTTCATCGGGCACAAATTATTGGGCGTCGTTTTCCTATTTGTATGGTCAATATTAAAGGCTCCATTACTGAGGTAGTGATGCATTTTCATTGGACTACTTAA 351 40.46 APCSIPVDAANNDMPKWNKINGRAFGITRSMIPSSSWIVLKVLHNKGFEAYLVGGCVRDLLLNRVPKDFDVITTAGLKQICKLFHRAQIIGRRFPICMVNIKGSITEVVMHFHWTT 116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15999581 16000429 + Lsi07G010620.1 Lsi07g01062 667484

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01062 116 Gene3D Beta Polymerase, domain 2 18 113 IPR043519 -
Lsi07g01062 116 Pfam Poly A polymerase head domain 50 108 IPR002646 GO:0003723|GO:0006396|GO:0016779
Lsi07g01062 116 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 108 - -
Lsi07g01062 116 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 9 108 - -
Lsi07g01062 116 SUPERFAMILY Nucleotidyltransferase 25 110 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01062 - - - csv:101212579 174.481
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00378 Lsi-Chr7:4063367 Lsi07g01062 Lsi-Chr7:15999581 1.47E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1182 . Blo16g00104 . . . Bpe13g00392 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1700 Cone9ag1623 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01062 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010274 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01062 Lsi_Chr07 FPKM 0.0 0.0 0.0 0.0 1.26381 2.262248 1.306749 0.0 0.0 0.0