Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01066 ATGTCTGCGGAGGAAGGTGATGTTAATGAAACTCCAGAAAGCCGAGTGGAAGAGGGGGCAATGTCTGGGGAGCTGGAATCCGGCATGAAACATGAGGGCAATGGCCATGTTGTCGTGGAAGACAGGGTTGCTGATGGCCAAAATTGCTCCGATGATCATGATGAGCTTGTACAATTGGTTATCGATATGAAATCTCAAAATGAATACTTAAAGTCTCAGTTGGTAAGCATGAAAAATCTTCAAAATGTGGAGAATGTGCCGGCACGAGAAGAAGAAATTGGTTCGAGAGATGGAGAATCCGTTAATTTGAAAGAACTTCAAGAAAGAATTGAGTCTTTGAGTAAAGAACTTTCGGAGGAAAAACAGACACGAGGTGCAGCAGAGCAAGCTTTGCAGCATCTCCAAGAAGCCCACTCAGAAGCAGATGCAAAAGTTCACGAACTTTCTGCAAAGCTCATCGAAGCTCAACAGAAGTTGGAGCAAGAAATAAAAGAACGTGATGAGAAATATTCTGACCTGGACTCAAAATTTAGTAGGCTACACAAACGAGCAAAGCAACGTATTCAAGATATTCAGAAGGAAAAAGATGACCTTGAGGCTCGATTTCGTGATGTTAATGAAAGAGCAGAGCGTGCAACATCCCAGCAGACTGCACTGCAACAAGAAATAGAACGCACTCGGCAACAAGCCAATGAAGCGTTGAAAGCAATAGATGCAGAGAGACAACAATTAAGAAGTGCAAACAATAAGCTTCGAGACAACATAGAAGAATTGCGACACTCATTGCAGCCTAAAGAAAGTGCAATTGAGGCATTGCAGCAGTCCCTTGTGGAGAAGGACCAGAGGCTGGAAGACATGAAGAATATGCTTCAAGCTGCTGAGGAGAAAAGGCAAGCTTCACTAGCTGACCTTTCTGCAAAACATCAGAAGACCTTGGAGAGCTTCCAAATGCAACTTTCTGATGCTTTATCTGATAGAAATAAAGCTACAGAGACTATTTCTTCTCTACAGGAATTAGTTGCAGAGAAAGAATCAAAGATTGCTGAGATGGATGCAGCATCAAGTGGTGATTCTGCAAGACTTAGAGCTGCTGTGGAAACTGTAAAAGGAGAGCTTGCTCACCTCAGAAATGAACATGTAGGCTCTTTGGAGAAAGAAAAGGAGACATGGCAAGCTGCTTCAGAGGCACTTAAAATGAAGTTAGAGATTGCTGAGAGCAATTGCATACGTGCTGAAATTGAAGCTGCTAAAATGAGGAGTCAGCTGGAATTGGAAGTTTCTGCAAAAACCCGGATGTTGAGTGCAAGAGATGCTGAACTACTGACTGTCAAAGAGGAGATGAATCGCCTTGAAAGTGAATTTTCTTCATACAAGGTTCGTGCTCATGCACTTCTACAGAAGAAGGAAGCAGAGCTAGCGGCTGCTGTGGACTCTGACCAAATCACAGCTCTTGAGGAAGCACTGAAGGAGGCTGAAAAGGAAATCACGTTGGCATATGCTGAAAAGGATCGGGTTCAGCTAGATCTTCAAAATGCATTGGAAAATCATGATAAAGAACTCAAAGAAAGAGATTCAGCCCTCAGCGACGCTGAGCAAAATATTAAGAGCCTAGAAAAGAGGCTTGAATTTGCCAATTTGCATCTTCATTCAGAAAAGGAAGCTTGGGAACAGAGCCTCCAAAACTTGGAGGAATCATGGCGAATCAGATGTGAAGCACTGAAATCTCAGTTTGAAGAATCCTCTAGGCAAGATGTAGAAAAGGAATTTGAAGAGCTGAAACAAGGGTATAAAAGATTGAAGGCAAAGCATAATTCATTCCGGGATCTTGCTGATAGAATGATCGAGGAAAAGGATACAGAAATTTCTAGGCTTTTAGATGATAACAAGAATCTTCGACAATCTTTGGAATCAAAGCCTCCCGCAGATCAAATTGATAATATTGCAGGAACTCAAAAACAGGACTCTTCAAATTTGGGTGCCTCCAATGCAGAACAGCAGATTCTGCTTTTAGCAAGGCAGCAGGCTCAGAGAGAAGAGCAACTAGCCCAATCACAGCGGCATATCTTAGCCCTTCAAGAAGAAATTGAGGAGCTTGAACGAGAGAATCGTCTGCATAGCCAACAGGAAGCAATGTTAAAGGCTGAGCTTCGTGATATGGAAAGATCACAGAAAAGGGAGGGTGTTGACATGACGTATCTGAAGAATGTCATCTTGAAGCTCCTTGAAACCGGTGAAGTAGAAGCTCTGCTACCTGTGGTTGCCATGCTCCTCCAGTTTAGTCCAGAAGAGGTTGTATATGCACTTTCTACTATTCTCTATCCTGTGAATGATTAG 2334 42.76 MSAEEGDVNETPESRVEEGAMSGELESGMKHEGNGHVVVEDRVADGQNCSDDHDELVQLVIDMKSQNEYLKSQLVSMKNLQNVENVPAREEEIGSRDGESVNLKELQERIESLSKELSEEKQTRGAAEQALQHLQEAHSEADAKVHELSAKLIEAQQKLEQEIKERDEKYSDLDSKFSRLHKRAKQRIQDIQKEKDDLEARFRDVNERAERATSQQTALQQEIERTRQQANEALKAIDAERQQLRSANNKLRDNIEELRHSLQPKESAIEALQQSLVEKDQRLEDMKNMLQAAEEKRQASLADLSAKHQKTLESFQMQLSDALSDRNKATETISSLQELVAEKESKIAEMDAASSGDSARLRAAVETVKGELAHLRNEHVGSLEKEKETWQAASEALKMKLEIAESNCIRAEIEAAKMRSQLELEVSAKTRMLSARDAELLTVKEEMNRLESEFSSYKVRAHALLQKKEAELAAAVDSDQITALEEALKEAEKEITLAYAEKDRVQLDLQNALENHDKELKERDSALSDAEQNIKSLEKRLEFANLHLHSEKEAWEQSLQNLEESWRIRCEALKSQFEESSRQDVEKEFEELKQGYKRLKAKHNSFRDLADRMIEEKDTEISRLLDDNKNLRQSLESKPPADQIDNIAGTQKQDSSNLGASNAEQQILLLARQQAQREEQLAQSQRHILALQEEIEELERENRLHSQQEAMLKAELRDMERSQKREGVDMTYLKNVILKLLETGEVEALLPVVAMLLQFSPEEVVYALSTILYPVND 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16017882 16030294 - Lsi07G010660.1 Lsi07g01066 667488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01066 777 Coils Coil 326 353 - -
Lsi07g01066 777 MobiDBLite consensus disorder prediction 1 30 - -
Lsi07g01066 777 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 44 763 - -
Lsi07g01066 777 SMART 1grip 726 770 IPR000237 -
Lsi07g01066 777 Coils Coil 96 176 - -
Lsi07g01066 777 MobiDBLite consensus disorder prediction 115 143 - -
Lsi07g01066 777 Pfam GRIP domain 727 763 IPR000237 -
Lsi07g01066 777 Coils Coil 358 378 - -
Lsi07g01066 777 Coils Coil 269 303 - -
Lsi07g01066 777 Coils Coil 614 634 - -
Lsi07g01066 777 Coils Coil 433 453 - -
Lsi07g01066 777 MobiDBLite consensus disorder prediction 634 658 - -
Lsi07g01066 777 ProSiteProfiles GRIP domain profile. 723 770 IPR000237 -
Lsi07g01066 777 Coils Coil 181 261 - -
Lsi07g01066 777 Coils Coil 681 715 - -
Lsi07g01066 777 PANTHER CROSSOVER SUPPRESSOR ON 3 OF GOWEN 44 763 - -
Lsi07g01066 777 Coils Coil 582 602 - -
Lsi07g01066 777 Coils Coil 387 421 - -
Lsi07g01066 777 Gene3D - 99 266 - -
Lsi07g01066 777 Coils Coil 474 565 - -
Lsi07g01066 777 MobiDBLite consensus disorder prediction 633 658 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01066 - - - csv:101223202 1284.63
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1180 Blo04g00866 . . . Bpe15g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0888 Cone12ag0858 . . . . . . . . . . . . . . . . . Cma16g01265 . . . . . . . . . . . . . . . . . . . Lsi07g01066 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007597 1 2 1 0 1 1 3 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01066 Lsi_Chr07 FPKM 14.018617 18.152134 3.411492 2.767401 5.112782 4.693211 5.415161 0.712183 0.71023 0.585614