Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01069 ATGGAGGGCATTTTTCACTGTCCTGCCAATTTTGCCCCTCTCTCGCCGGTCAGCTTTTTGGAAAGAGCCGCCACCGTGTATGGCTACCGGCCCTCGGTGGTTTACGGCGCTCGAGTCTTCACTTGGTCGGAGACTTATAGCCGGTGTCTCACCCTCGCTTCCGCTTTGGTTCATCACTTCCACGTGGCTCCCGGTGATTTGGTTGTAGCAATCGCACCCAATATCCCAGAACTCTACGAGCTTCACTTCGCAGTTCCAATGGCTGGAGCCATAATTTCAGCTCTCAACACAAAACTAGACGCACCTACATTATCGTTACTCCTCCAACAACTCCACCCCAAAATCATCTTCTTAGACTCCCAATTTCTTCCCATTCTCCTCAAATCCCTTGCAAATAATACCATCAAATTTCCCGCCCTCGTCCTCATTCCCGCCGATCCCGATACCTCATTATCGTCAGAATTCCCCGACTACAATAAAGTTCTTGCAATGAGATTCGGCGACGACGACGACTTCAAGCCTAGGCCAAACGCTGATCTCGATCCCATTTCCATCAATTACACCTCAGGCTCGACCGGGCTCCATAAGGGTGCTATTTATAGCCATAGAGCTGCTTACCTCAATTCTCTAGCCACCATTTTTCGCAGCGGAATTTGCAGCTCCACTTCTTCACCAGTGTTCTTATGGACCGTTGACATGTTTCGATGCAATGGTTGGTGCTTCATTTGGGCCATGGCGGCTCTAGGAGGTTGCAATATTTGTCTTAGAACTGTCACAGGTGATGTCATATTCACCAATGTTGAACTTCACAAAGTCACTCTTTTATGTGGTCCATCCACTCTTTTGAAAATGATTTCGGAATGGTCGTCCAATCACTATACGCCACGTCGTCTTTCGCAACGTGTGGATCTCATAGTGGCTGGTGCATTACCAATCAAAGAGATATTGACCAAAGTCAATGAATTGGGCTTTAATATAAGTTATGGTTATGGTATGACTGAAGCAATGGGGCCAGCCATAATTAGGCCTTGGAAGCCCAATTTTGAAGAAGAAAAAGTCCAATTTGAGGATTTGATCACGTCATTGGAGATTGATGTGAAAGATCCAATATCAATGGAGAGTGTTTTGGGAGATGGTGAAACCTTAGGAGAAGTAATGTTGAGAGGCAACACTTTGATGTGTGGTTATTACAAGAATTTGAAGGCAACTCATGAGGCTTTTAGTGGGGATAATTGGTATAGGACTGGTGATGTTGGGGTTAGACACAAGAATGGTAGAATTGAGATGAAGGATAGAGCTAAGGATATTGTAGTGAGGGCCGATGGGGAAGGTGCGGTGAGCACGGTGGAGGTCGAAGGGGTGTTGATGAGCCACCCGAACGTGGTGGAGGCGGCGGTGGTCGAGGAGAGGATGTTATGTGGGTTTGTCAAATTGAAGAATGGGAGTAGAGAGAATGCTGATGGGATTATGGAGTTTTGTGGAATGCATTTGCCTGAGTTTATGGTGCCTAAGAAGATTATATTTGGAGACTTGCCACTGAATTCAACAGGGAAGGTACAGAAGTTTGTTGTGAGGGAGAAGGCAAAGGCATTGAATGCCAATAATACAATATAA 1614 46.1 MEGIFHCPANFAPLSPVSFLERAATVYGYRPSVVYGARVFTWSETYSRCLTLASALVHHFHVAPGDLVVAIAPNIPELYELHFAVPMAGAIISALNTKLDAPTLSLLLQQLHPKIIFLDSQFLPILLKSLANNTIKFPALVLIPADPDTSLSSEFPDYNKVLAMRFGDDDDFKPRPNADLDPISINYTSGSTGLHKGAIYSHRAAYLNSLATIFRSGICSSTSSPVFLWTVDMFRCNGWCFIWAMAALGGCNICLRTVTGDVIFTNVELHKVTLLCGPSTLLKMISEWSSNHYTPRRLSQRVDLIVAGALPIKEILTKVNELGFNISYGYGMTEAMGPAIIRPWKPNFEEEKVQFEDLITSLEIDVKDPISMESVLGDGETLGEVMLRGNTLMCGYYKNLKATHEAFSGDNWYRTGDVGVRHKNGRIEMKDRAKDIVVRADGEGAVSTVEVEGVLMSHPNVVEAAVVEERMLCGFVKLKNGSRENADGIMEFCGMHLPEFMVPKKIIFGDLPLNSTGKVQKFVVREKAKALNANNTI 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16051697 16058420 - Lsi07G010690.1 Lsi07g01069 667491

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01069 537 SUPERFAMILY Acetyl-CoA synthetase-like 9 530 - -
Lsi07g01069 537 Gene3D - 6 434 IPR042099 -
Lsi07g01069 537 PANTHER FATTY ACYL-COA SYNTHETASE FAMILY PROTEIN 22 531 - -
Lsi07g01069 537 Pfam AMP-binding enzyme 21 439 IPR000873 -
Lsi07g01069 537 Gene3D - 442 537 IPR045851 -
Lsi07g01069 537 PANTHER ACYL-ACTIVATING ENZYME 22 531 - -
Lsi07g01069 537 Pfam AMP-binding enzyme C-terminal domain 450 518 IPR025110 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01069 - - - csv:101212332 935.25
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01069 Lsi-Chr7:16051697 Lsi09g00887 Lsi-Chr9:10415847 5.16E-133 dispersed
Lsi01g00540 Lsi-Chr1:4388848 Lsi07g01069 Lsi-Chr7:16051697 2.77E-149 wgd
Lsi04g01799 Lsi-Chr4:25215643 Lsi07g01069 Lsi-Chr7:16051697 3.20E-165 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1171 . Blo16g00100 Bda04g00359 . . . . Bma15g00900 . . . . . . Sed14g0208 Cpe19g00547 . Bhi03g01403 Tan03g1361 Cmetu08g1663 . Hepe04g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01069 Csa06g02816 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011012 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01069 Lsi_Chr07 FPKM 1.214404 0.985185 20.274376 21.291933 16.912287 13.412362 17.279041 8.569288 8.76862 9.145773