Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01075 | ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGCGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATTCAGCAATCAAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTAGACAGGGCAGAAGATGTCCTTACCCATAAGAGATTACTCCAATTGGCTGTGGACCCTGCTAACCGACCTGTATTTGAAATTCGTTCTGTGCAGGTTTATCCTTCTGCTAACGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGTGGCTCCCAAGGGGTGGCCCCATTGGTAAGGGCTTGGGGCTTGGGTTGCACACGAACCATCCACCTCCAACTTTTGGCTCTTCACCTAATCTTGAAGCCCTTGCATTTCACGGCAGCATGTATGGCGTTGAAGATAAGGACAGTGCCCCAAATGTGACACCCTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCTTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTTTGAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCGGGGTCATTTGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCGTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAGTTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATCGTGACAGAGTTTATGTCAAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGGGTATTTAACCTTCCATCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTGCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATATCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGTGTGGTCCAGAAGAGACTGCGGCCTACAATACCAAAGAATGTCCATCCTGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTAGGTCGAAAACAACGGGGAAAATCGACGCAAGAAGGACAAATTATCTGGTGCATTCTTCTCAGCCTTCAAGAGGGGACACCACTGAATGCACTGGAGGAGCTTAGCCAGAGTTGCAATGGTGCTGCTATATTGGTAGAGCCCTTCAATGTCCATGGCCTAACCCGTAGCATGTTGTATAATATGTTACTTAAAACTGATACATATGAATGTAGAATTCGTCTTCTTTCTTTGATATTACAAGTTTGA | 1905 | 43.83 | MPIEDDVESCGSRATDSSSSHANPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQWLPRGGPIGKGLGLGLHTNHPPPTFGSSPNLEALAFHGSMYGVEDKDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPFEEQCWSEKQPSPALGKHNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRRERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAIDISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGISLWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNVHPVLAELLERCWRHDPTERPNFSEILEILKQIAEQVGRKQRGKSTQEGQIIWCILLSLQEGTPLNALEELSQSCNGAAILVEPFNVHGLTRSMLYNMLLKTDTYECRIRLLSLILQV | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16102866 | 16110545 | - | Lsi07G010750.1 | Lsi07g01075 | 667497 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01075 | 634 | CDD | STKc_MAP3K-like | 303 | 546 | - | - | |
Lsi07g01075 | 634 | Gene3D | Phosphorylase Kinase; domain 1 | 287 | 375 | - | - | |
Lsi07g01075 | 634 | ProSitePatterns | Protein kinases ATP-binding region signature. | 303 | 324 | IPR017441 | GO:0005524 | |
Lsi07g01075 | 634 | Gene3D | Transferase(Phosphotransferase) domain 1 | 376 | 571 | - | - | |
Lsi07g01075 | 634 | SUPERFAMILY | Protein kinase-like (PK-like) | 272 | 546 | IPR011009 | - | |
Lsi07g01075 | 634 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 17 | 564 | - | - | |
Lsi07g01075 | 634 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 414 | 426 | IPR008271 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | Pfam | Protein tyrosine and serine/threonine kinase | 297 | 546 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | SUPERFAMILY | ACT-like | 199 | 248 | IPR045865 | - | |
Lsi07g01075 | 634 | SMART | serkin_6 | 297 | 549 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi07g01075 | 634 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Lsi07g01075 | 634 | ProSiteProfiles | Protein kinase domain profile. | 297 | 549 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Lsi07g01075 | 634 | PRINTS | Tyrosine kinase catalytic domain signature | 408 | 426 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | PRINTS | Tyrosine kinase catalytic domain signature | 371 | 384 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | PRINTS | Tyrosine kinase catalytic domain signature | 473 | 495 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | PRINTS | Tyrosine kinase catalytic domain signature | 517 | 539 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | PRINTS | Tyrosine kinase catalytic domain signature | 454 | 464 | IPR001245 | GO:0004672|GO:0006468 | |
Lsi07g01075 | 634 | PANTHER | ACT-LIKE TYROSINE KINASE FAMILY PROTEIN | 17 | 564 | - | - | |
Lsi07g01075 | 634 | ProSiteProfiles | ACT domain profile. | 201 | 289 | IPR002912 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi01g01250 | Lsi-Chr1:10677564 | Lsi07g01075 | Lsi-Chr7:16102866 | 1.29E-45 | dispersed | |
Lsi02g00759 | Lsi-Chr2:6999270 | Lsi07g01075 | Lsi-Chr7:16102866 | 2.15E-73 | dispersed | |
Lsi03g01347 | Lsi-Chr3:24355166 | Lsi07g01075 | Lsi-Chr7:16102866 | 4.98E-56 | dispersed | |
Lsi04g02284 | Lsi-Chr4:29872057 | Lsi07g01075 | Lsi-Chr7:16102866 | 1.69E-50 | dispersed | |
Lsi07g01075 | Lsi-Chr7:16102866 | Lsi11g01225 | Lsi-Chr11:20841418 | 8.70E-139 | dispersed | |
Lsi09g01493 | Lsi-Chr9:22981246 | Lsi07g01075 | Lsi-Chr7:16102866 | 1.34E-22 | dispersed | |
Lsi11g00730 | Lsi-Chr11:7944044 | Lsi07g01075 | Lsi-Chr7:16102866 | 4.81E-49 | dispersed | |
Lsi11g00832 | Lsi-Chr11:10353365 | Lsi07g01075 | Lsi-Chr7:16102866 | 3.56E-58 | dispersed | |
Lsi04g02122 | Lsi-Chr4:28353513 | Lsi07g01075 | Lsi-Chr7:16102866 | 5.24E-18 | transposed | |
Lsi08g00545 | Lsi-Chr8:13577550 | Lsi07g01075 | Lsi-Chr7:16102866 | 3.88E-137 | transposed | |
Lsi10g01454 | Lsi-Chr10:18624418 | Lsi07g01075 | Lsi-Chr7:16102866 | 6.97E-46 | transposed | |
Lsi11g01226 | Lsi-Chr11:20851614 | Lsi07g01075 | Lsi-Chr7:16102866 | 2.44E-23 | transposed | |
Lsi04g01782 | Lsi-Chr4:25024973 | Lsi07g01075 | Lsi-Chr7:16102866 | 4.31E-173 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83798 | PF07714 | PK_Tyr_Ser-Thr | 7.20E-75 | CL0016 | Lsi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01075 | - | - | csv:101220844 | 1023.08 |