Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01075 ATGCCGATTGAAGATGATGTTGAGAGCTGCGGTAGCAGAGCCACCGACTCCTCCTCGTCCCATGCGAACCCGAGGCATCATCGCCAGAAGCTTGAAGTCTACAACGAAGTGCTCCGACGAATTCAGCAATCAAATTTCCATGAGGCCAATCTACCTGGGTTTGATGATCAGCTTTGGCTTCATTTTAATCGCCTCCCTGCTCGATACGCATTGGATGTGAATGTAGACAGGGCAGAAGATGTCCTTACCCATAAGAGATTACTCCAATTGGCTGTGGACCCTGCTAACCGACCTGTATTTGAAATTCGTTCTGTGCAGGTTTATCCTTCTGCTAACGAAAACTTTATCAATTCTTCTTGTTTGGATTCTTCAATGATGGAAGATGCTCAGAGTTCTTTGAACTATTCTAACAGACAGTGGCTCCCAAGGGGTGGCCCCATTGGTAAGGGCTTGGGGCTTGGGTTGCACACGAACCATCCACCTCCAACTTTTGGCTCTTCACCTAATCTTGAAGCCCTTGCATTTCACGGCAGCATGTATGGCGTTGAAGATAAGGACAGTGCCCCAAATGTGACACCCTGCTTTTCTCGGCCAATGCATGAGATCACATTTGCAACAAGTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCCTTACTAGCTGATGTTGGACTTAACATACAAGAAGCTCATGCTTTCTCTTCTGTTGATGGTTTCTCTCTGGATGTTTTTGTCATCGATGGTTGGCCTTTTGAGGAGCAGTGTTGGTCAGAAAAGCAGCCCAGTCCTGCTTTGGGTAAGCATAACCAGAATAGAGTTGAATCTTTTCCTAGTTGTGTTGAAATACCTACTGATGGTACTGATGTCTGGGAAATTGACACCAGACAACTAAAATTTGAGAATAAAGTTGGATCGGGGTCATTTGGGGACCTGTATCGGGGCACGTATTGTAGTCAGGAAGTAGCTATTAAAGTACTGAGGCGTGAGCGTATTAATGAAGAGATGCTCAAAGAATTCTCTCAAGAAGTTTATATAATGAGGAAAGTTCGGCACAAAAATGTTGTTCAGTTCATTGGTGCTTGTACTAAACCTCCAAACCTCTGCATCGTGACAGAGTTTATGTCAAGAGGAAGTGTATATGACTTCCTTCATAAGCAAAGAGGGGTATTTAACCTTCCATCTTTACTTAAAGTAGCCATTGATATTTCAAGAGGGATGAACTATTTGCATCAAAATAATATAATCCATCGAGACCTCAAGACTGCCAATCTTCTGATGGATGAAAACATGGTTGTCAAGGTTGCTGATTTTGGAGTTGCCAGAGTGCAAACTCAATCTGGAGTGATGACTGCTGAAACTGGAACATACCGGTGGATGGCTCCTGAAGTTATTGAGCATAAACCATATGACCATAAGGCAGACGTTTTCAGCTTTGGAATATCCTTATGGGAGCTTTTAACTGGAGAAATTCCTTACTCATCCATGACCCCACTACAAGCAGCGGTTGGTGTGGTCCAGAAGAGACTGCGGCCTACAATACCAAAGAATGTCCATCCTGTTCTTGCTGAACTGCTTGAAAGATGCTGGAGGCATGATCCAACCGAACGGCCAAACTTCTCTGAAATTTTGGAGATCCTCAAGCAGATAGCTGAGCAGGTAGGTCGAAAACAACGGGGAAAATCGACGCAAGAAGGACAAATTATCTGGTGCATTCTTCTCAGCCTTCAAGAGGGGACACCACTGAATGCACTGGAGGAGCTTAGCCAGAGTTGCAATGGTGCTGCTATATTGGTAGAGCCCTTCAATGTCCATGGCCTAACCCGTAGCATGTTGTATAATATGTTACTTAAAACTGATACATATGAATGTAGAATTCGTCTTCTTTCTTTGATATTACAAGTTTGA 1905 43.83 MPIEDDVESCGSRATDSSSSHANPRHHRQKLEVYNEVLRRIQQSNFHEANLPGFDDQLWLHFNRLPARYALDVNVDRAEDVLTHKRLLQLAVDPANRPVFEIRSVQVYPSANENFINSSCLDSSMMEDAQSSLNYSNRQWLPRGGPIGKGLGLGLHTNHPPPTFGSSPNLEALAFHGSMYGVEDKDSAPNVTPCFSRPMHEITFATSDKPKLLSQLTSLLADVGLNIQEAHAFSSVDGFSLDVFVIDGWPFEEQCWSEKQPSPALGKHNQNRVESFPSCVEIPTDGTDVWEIDTRQLKFENKVGSGSFGDLYRGTYCSQEVAIKVLRRERINEEMLKEFSQEVYIMRKVRHKNVVQFIGACTKPPNLCIVTEFMSRGSVYDFLHKQRGVFNLPSLLKVAIDISRGMNYLHQNNIIHRDLKTANLLMDENMVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDHKADVFSFGISLWELLTGEIPYSSMTPLQAAVGVVQKRLRPTIPKNVHPVLAELLERCWRHDPTERPNFSEILEILKQIAEQVGRKQRGKSTQEGQIIWCILLSLQEGTPLNALEELSQSCNGAAILVEPFNVHGLTRSMLYNMLLKTDTYECRIRLLSLILQV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16102866 16110545 - Lsi07G010750.1 Lsi07g01075 667497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01075 634 CDD STKc_MAP3K-like 303 546 - -
Lsi07g01075 634 Gene3D Phosphorylase Kinase; domain 1 287 375 - -
Lsi07g01075 634 ProSitePatterns Protein kinases ATP-binding region signature. 303 324 IPR017441 GO:0005524
Lsi07g01075 634 Gene3D Transferase(Phosphotransferase) domain 1 376 571 - -
Lsi07g01075 634 SUPERFAMILY Protein kinase-like (PK-like) 272 546 IPR011009 -
Lsi07g01075 634 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 564 - -
Lsi07g01075 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Lsi07g01075 634 Pfam Protein tyrosine and serine/threonine kinase 297 546 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 SUPERFAMILY ACT-like 199 248 IPR045865 -
Lsi07g01075 634 SMART serkin_6 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01075 634 MobiDBLite consensus disorder prediction 1 28 - -
Lsi07g01075 634 ProSiteProfiles Protein kinase domain profile. 297 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01075 634 PRINTS Tyrosine kinase catalytic domain signature 408 426 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 PRINTS Tyrosine kinase catalytic domain signature 371 384 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 PRINTS Tyrosine kinase catalytic domain signature 473 495 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 PRINTS Tyrosine kinase catalytic domain signature 517 539 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 PRINTS Tyrosine kinase catalytic domain signature 454 464 IPR001245 GO:0004672|GO:0006468
Lsi07g01075 634 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 17 564 - -
Lsi07g01075 634 ProSiteProfiles ACT domain profile. 201 289 IPR002912 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01250 Lsi-Chr1:10677564 Lsi07g01075 Lsi-Chr7:16102866 1.29E-45 dispersed
Lsi02g00759 Lsi-Chr2:6999270 Lsi07g01075 Lsi-Chr7:16102866 2.15E-73 dispersed
Lsi03g01347 Lsi-Chr3:24355166 Lsi07g01075 Lsi-Chr7:16102866 4.98E-56 dispersed
Lsi04g02284 Lsi-Chr4:29872057 Lsi07g01075 Lsi-Chr7:16102866 1.69E-50 dispersed
Lsi07g01075 Lsi-Chr7:16102866 Lsi11g01225 Lsi-Chr11:20841418 8.70E-139 dispersed
Lsi09g01493 Lsi-Chr9:22981246 Lsi07g01075 Lsi-Chr7:16102866 1.34E-22 dispersed
Lsi11g00730 Lsi-Chr11:7944044 Lsi07g01075 Lsi-Chr7:16102866 4.81E-49 dispersed
Lsi11g00832 Lsi-Chr11:10353365 Lsi07g01075 Lsi-Chr7:16102866 3.56E-58 dispersed
Lsi04g02122 Lsi-Chr4:28353513 Lsi07g01075 Lsi-Chr7:16102866 5.24E-18 transposed
Lsi08g00545 Lsi-Chr8:13577550 Lsi07g01075 Lsi-Chr7:16102866 3.88E-137 transposed
Lsi10g01454 Lsi-Chr10:18624418 Lsi07g01075 Lsi-Chr7:16102866 6.97E-46 transposed
Lsi11g01226 Lsi-Chr11:20851614 Lsi07g01075 Lsi-Chr7:16102866 2.44E-23 transposed
Lsi04g01782 Lsi-Chr4:25024973 Lsi07g01075 Lsi-Chr7:16102866 4.31E-173 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83798 PF07714 PK_Tyr_Ser-Thr 7.20E-75 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01075 - - csv:101220844 1023.08