Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01081 ATGGATTTCATAGCTAACCCATTTCGCTTTTCTTCATCTTCGTCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTTGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGTCTAGTTCGAGAACGCATAGGTCCGGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGATGACATCCCGAACATCTTCGACACCAGTAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATTGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGCTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA 708 45.06 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 16183611 16186045 + Lsi07G010810.1 Lsi07g01081 667503
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01081 235 Pfam Ring finger domain 190 232 IPR001841 -
Lsi07g01081 235 SMART ring_2 190 231 IPR001841 -
Lsi07g01081 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 9 235 - -
Lsi07g01081 235 CDD RING-H2_PA-TM-RING 189 232 - -
Lsi07g01081 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Lsi07g01081 235 Pfam YMGG-like Gly-zipper 49 85 IPR027367 -
Lsi07g01081 235 SUPERFAMILY RING/U-box 176 235 - -
Lsi07g01081 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Lsi07g01081 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 9 235 IPR044523 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01081 Lsi-Chr7:16183611 Lsi03g00730 Lsi-Chr3:9827304 5.51E-15 dispersed
Lsi07g01081 Lsi-Chr7:16183611 Lsi05g01879 Lsi-Chr5:25975125 3.84E-16 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01081 - - csv:101220376 460.685