Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi07g01081 | ATGGATTTCATAGCTAACCCATTTCGCTTTTCTTCATCTTCGTCGCCTTCCTTTGGGAATCTCTTTGAGAGAGTTAGAGAAATTTGCTGCTATGCGGTTTCTGCGATTCTTGGCAACATCTTGTCTGCGATCTTCACTTTCTTCTTCGCCCTAGTTGGGACTTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGGTTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCAGATGAATCAGGGATAGGCTGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGTCTAGTTCGAGAACGCATAGGTCCGGCCATATTGAGCGCAGTTCAAAGTCAGATGGGTGCTACAGAGACAAGCTTTGATGACATCCCGAACATCTTCGACACCAGTAGTGCGAAAGGATTGCCTGGGGACTCGGTCGAGAAAATTCCCAAGATTGTAGTATCTAAGAACAATAGTGTAGATGCTTATGGTGAGAGAGTCTGCTGTTCTGTTTGCCTTCAGGACTTTCAGCTTGGAGAGACTGTAAGAAGCTTACCATATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGCAGAAGGGATCTGTAA | 708 | 45.06 | MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATETSFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL | 235 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 16183611 | 16186045 | + | Lsi07G010810.1 | Lsi07g01081 | 667503 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi07g01081 | 235 | Pfam | Ring finger domain | 190 | 232 | IPR001841 | - | |
| Lsi07g01081 | 235 | SMART | ring_2 | 190 | 231 | IPR001841 | - | |
| Lsi07g01081 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 1 | 9 | 235 | - | - | |
| Lsi07g01081 | 235 | CDD | RING-H2_PA-TM-RING | 189 | 232 | - | - | |
| Lsi07g01081 | 235 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 235 | IPR013083 | - | |
| Lsi07g01081 | 235 | Pfam | YMGG-like Gly-zipper | 49 | 85 | IPR027367 | - | |
| Lsi07g01081 | 235 | SUPERFAMILY | RING/U-box | 176 | 235 | - | - | |
| Lsi07g01081 | 235 | ProSiteProfiles | Zinc finger RING-type profile. | 190 | 232 | IPR001841 | - | |
| Lsi07g01081 | 235 | PANTHER | NEP1-INTERACTING PROTEIN-LIKE 2 | 9 | 235 | IPR044523 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi07g01081 | Lsi-Chr7:16183611 | Lsi03g00730 | Lsi-Chr3:9827304 | 5.51E-15 | dispersed | |
| Lsi07g01081 | Lsi-Chr7:16183611 | Lsi05g01879 | Lsi-Chr5:25975125 | 3.84E-16 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi07g01081 | - | - | csv:101220376 | 460.685 |