Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01082 ATGTTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCGTCTCTCGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCACCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGTCCCTTGAGCTTGCTCGAGTCCGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCTGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTTGCCACAGAAGAAAAGGAAATGTCAGTAAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAAATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGGAAACTCTACATTGCCAATCTTGGTGATTCGCGAGCTGTGTTGGGAAGGCTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATACAGTCGGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCAGATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCCCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTCTGAGCTCAGAACCAGCAGTCTCTGTGCATGAACTCGATCCAAACGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGGGTTCGGCGTCATTTTCACGACGATACAACGGTGATAGTCGTGTTTCTCGGTTTGAGCAGAGGGAGCAGTGCTACAGGGGGAGGAAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAGTGAACCTATCTGCAAAATCTCTAGCACCTTGA 1173 48.93 MLSSLMNFLRACWQPCADRLSRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSLVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGLSRGSSATGGGSPVLSVRGGGVNLSAKSLAP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16190074 16194703 - Lsi07G010820.1 Lsi07g01082 667504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01082 390 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Lsi07g01082 390 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Lsi07g01082 390 PANTHER ALPHABET, ISOFORM E-RELATED 6 386 - -
Lsi07g01082 390 SMART PP2C_4 42 356 IPR001932 -
Lsi07g01082 390 CDD PP2Cc 82 358 IPR001932 -
Lsi07g01082 390 Gene3D - 40 362 IPR036457 -
Lsi07g01082 390 PANTHER PROTEIN PHOSPHATASE 2C 60-RELATED 6 386 - -
Lsi07g01082 390 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Lsi07g01082 390 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi03g00563 Lsi-Chr3:6806984 Lsi07g01082 Lsi-Chr7:16190074 5.96E-141 dispersed
Lsi07g01082 Lsi-Chr7:16190074 Lsi10g00506 Lsi-Chr10:7237062 0 dispersed
Lsi07g01218 Lsi-Chr7:17726057 Lsi07g01082 Lsi-Chr7:16190074 6.97E-37 dispersed
Lsi10g01376 Lsi-Chr10:17901763 Lsi07g01082 Lsi-Chr7:16190074 3.78E-36 dispersed
Lsi01g00567 Lsi-Chr1:4537651 Lsi07g01082 Lsi-Chr7:16190074 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01082 K01102 - csv:101220137 749.584