Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01082 | ATGTTATCAAGCTTGATGAACTTCCTGAGGGCTTGCTGGCAGCCATGTGCCGATCGTCTCTCGCGTCGTCGGGGCGGTGGTTCCGATTCGGTTGGCTGCCAAGATGGGCTACTTTGGTACAAGGACCATGGCCACCACATCAATGGAGAATTTTCAATGGCTGTTGTTCAAGCCAACAATTTACTTGAGGATCAGAGCCAGCTTGAGTCTGGTCCCTTGAGCTTGCTCGAGTCCGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGTGGCCCTGAGACATCGCGATTCATATGTGATAACTTGTTCCAGCATCTCAAAGTGTTTGCCACAGAAGAAAAGGAAATGTCAGTAAATGTGATAAAAAAAGCATTCCAAGCAACAGAAGAGGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTATGAACCCCCAAATTGCGGCTGTTGGTTCTTGCTGTCTGGTTGCTGTGATTTGTAATGGGAAACTCTACATTGCCAATCTTGGTGATTCGCGAGCTGTGTTGGGAAGGCTAGTTCGGTCCACGGGGGAAGTTCTTCCCATTCAGCTGTCATCGGAGCATAATGTAAGCATACAGTCGGTCCGCCAGGAGATGCAGTCTTTGCACCCAGATGACTCCCAGATAGTAGTGCTGAAGCATAATGTATGGCGCGTAAAGGGCTTGATTCAGATTTCCCGGTCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCTAAGTTTCGCCTCCGAGAACCCTTCAGTAGGCCTATTCTGAGCTCAGAACCAGCAGTCTCTGTGCATGAACTCGATCCAAACGATCAATTTCTCATATTTGCCTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCAGCAATGCAGGAAGCAGCTAAGAAACGAGAAATGCGATACTCGGATTTGAAGAAGATTGACCGTGGGGTTCGGCGTCATTTTCACGACGATACAACGGTGATAGTCGTGTTTCTCGGTTTGAGCAGAGGGAGCAGTGCTACAGGGGGAGGAAGCCCTGTTTTGTCTGTGAGAGGGGGAGGAGTGAACCTATCTGCAAAATCTCTAGCACCTTGA | 1173 | 48.93 | MLSSLMNFLRACWQPCADRLSRRRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFICDNLFQHLKVFATEEKEMSVNVIKKAFQATEEGFLSLVTKQWPMNPQIAAVGSCCLVAVICNGKLYIANLGDSRAVLGRLVRSTGEVLPIQLSSEHNVSIQSVRQEMQSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSRPILSSEPAVSVHELDPNDQFLIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGLSRGSSATGGGSPVLSVRGGGVNLSAKSLAP | 390 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16190074 | 16194703 | - | Lsi07G010820.1 | Lsi07g01082 | 667504 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01082 | 390 | Pfam | Protein phosphatase 2C | 83 | 327 | IPR001932 | - | |
Lsi07g01082 | 390 | ProSiteProfiles | PPM-type phosphatase domain profile. | 50 | 358 | IPR001932 | - | |
Lsi07g01082 | 390 | PANTHER | ALPHABET, ISOFORM E-RELATED | 6 | 386 | - | - | |
Lsi07g01082 | 390 | SMART | PP2C_4 | 42 | 356 | IPR001932 | - | |
Lsi07g01082 | 390 | CDD | PP2Cc | 82 | 358 | IPR001932 | - | |
Lsi07g01082 | 390 | Gene3D | - | 40 | 362 | IPR036457 | - | |
Lsi07g01082 | 390 | PANTHER | PROTEIN PHOSPHATASE 2C 60-RELATED | 6 | 386 | - | - | |
Lsi07g01082 | 390 | SUPERFAMILY | PP2C-like | 62 | 359 | IPR036457 | - | |
Lsi07g01082 | 390 | ProSitePatterns | PPM-type phosphatase domain signature. | 84 | 92 | IPR000222 | GO:0043169 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi03g00563 | Lsi-Chr3:6806984 | Lsi07g01082 | Lsi-Chr7:16190074 | 5.96E-141 | dispersed | |
Lsi07g01082 | Lsi-Chr7:16190074 | Lsi10g00506 | Lsi-Chr10:7237062 | 0 | dispersed | |
Lsi07g01218 | Lsi-Chr7:17726057 | Lsi07g01082 | Lsi-Chr7:16190074 | 6.97E-37 | dispersed | |
Lsi10g01376 | Lsi-Chr10:17901763 | Lsi07g01082 | Lsi-Chr7:16190074 | 3.78E-36 | dispersed | |
Lsi01g00567 | Lsi-Chr1:4537651 | Lsi07g01082 | Lsi-Chr7:16190074 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01082 | K01102 | - | csv:101220137 | 749.584 |