Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01090 ATGAGCGCTTCAAGGTTCATCAAGTGCGTCACCGTTGGAGACGGAGCTGTCGGCAAAACTTGTCTCCTTATCTCCTATACCAGCAACACCTTCCCCACTGATTATGTACCTACAGTTTTCGACAATTTCAGTGCAAATGTGGTTGTTAATGGAAGCACTGTTAACCTAGGGTTATGGGATACGGCTGGACAGGAGGATTATAACCGGCTAAGGCCTTTGAGTTATCGTGGGGCAGATGTTTTTATATTGGCATTCTCTCTCATTAGCAAGGCCAGCTATGAAAATGTTTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCACCAGGAGTACCTATTGTTCTGGTTGGAACTAAGCTTGATCTTCGAGATGATAAGCAATTCTTTATTGACCATCCTGGCGCAGTTCCTATTTCAACAGCTCAAGGGGAGGAGCTTAGAAAGCTGATCGGAGCTCCTGCATACATCGAGTGCAGTTCAAAAACTCAGCAGAATGTGAAGGGAGTTTTTGATGCAGCAATTAGGGTTGTACTTCAACCTCCAAAGCAGAAGAAAAAGAAGAGCAAAGCTCAGAAAGCGTGCTCGATATTATGA 594 43.94 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPISTAQGEELRKLIGAPAYIECSSKTQQNVKGVFDAAIRVVLQPPKQKKKKSKAQKACSIL 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16297269 16301667 - Lsi07G010900.1 Lsi07g01090 667512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01090 197 CDD Rop_like 6 178 - -
Lsi07g01090 197 PANTHER RHO FAMILY GTPASE 1 197 IPR003578 GO:0005525|GO:0007264
Lsi07g01090 197 SMART ras_sub_4 4 180 - -
Lsi07g01090 197 PRINTS Transforming protein P21 ras signature 7 28 - -
Lsi07g01090 197 PRINTS Transforming protein P21 ras signature 30 46 - -
Lsi07g01090 197 PRINTS Transforming protein P21 ras signature 47 69 - -
Lsi07g01090 197 PRINTS Transforming protein P21 ras signature 109 122 - -
Lsi07g01090 197 PRINTS Transforming protein P21 ras signature 155 177 - -
Lsi07g01090 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 178 IPR027417 -
Lsi07g01090 197 ProSiteProfiles small GTPase Rho family profile. 1 177 - -
Lsi07g01090 197 SMART ran_sub_2 12 197 - -
Lsi07g01090 197 Gene3D - 5 192 IPR027417 -
Lsi07g01090 197 ProSiteProfiles small GTPase Rab1 family profile. 2 197 - -
Lsi07g01090 197 TIGRFAM small_GTP: small GTP-binding protein domain 7 171 IPR005225 GO:0005525
Lsi07g01090 197 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC11 1 197 - -
Lsi07g01090 197 SMART rab_sub_5 7 180 - -
Lsi07g01090 197 ProSiteProfiles small GTPase Ras family profile. 2 197 IPR001806 GO:0003924|GO:0005525
Lsi07g01090 197 Pfam Ras family 8 178 IPR001806 GO:0003924|GO:0005525
Lsi07g01090 197 SMART rho_sub_3 9 180 IPR001806 GO:0003924|GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01090 K04392 RAC1; Ras-related C3 botulinum toxin substrate 1 - csv:101218715 377.867
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00271 Lsi-Chr1:2414741 Lsi07g01090 Lsi-Chr7:16297269 6.56E-71 dispersed
Lsi07g01090 Lsi-Chr7:16297269 Lsi08g01305 Lsi-Chr8:21409246 1.33E-117 dispersed
Lsi11g00536 Lsi-Chr11:5625135 Lsi07g01090 Lsi-Chr7:16297269 2.47E-10 dispersed
Lsi07g01090 Lsi-Chr7:16297269 Lsi06g00853 Lsi-Chr6:17968953 3.03E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1156 Blo04g00979 Blo16g00089 . . Bpe15g00483 Bpe13g00407 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0862 Cone12ag0826 . . . . . . . . Bda11g01828 . . . . Bma06g00090 Sed01g0196 . . . . . . . . Bhi10g01852 Tan05g1137 Cmetu11g1470 . Hepe08g0292 . . . . . . . . . Lsi07g01090 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000081 8 10 6 8 9 9 12 9 9 8 7 9 10 9 9 11 9 16 12 7 8 8 9 9 4 5 6 16 12 8 272
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01090 Lsi_Chr07 FPKM 2.510792 1.769103 3.989284 3.832193 5.670014 6.087286 5.141888 5.416801 5.902437 5.818884