Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01092 ATGGAGGAAATCCAGATTTTGGAAACGCCCAAAATTCTGAGAATGAACCATGGAATCGGCGACCGAAGCTACGCCACGAACTCAATCTCACAGAGCAAATACCAGTCCGGATCCCTTCCTCTGCTCCGCCGCGCCGTCGCCGCCTTATGTGCCGCCGATTTGCCAACCGCCATCGCCGTCGCTGATCTCGGCTGTTCTTCAGGACCGAACGCGCTCTTTGCGATCTCGGAGATCGTCGGCGTGATCCATCGCCGGTGCTGCGGAGATCCTCCGGAGTTGATGGTGTTTTTAAACGATCTGGCGGAGAATGATTTCAACTCTGTTTTTAGAGGATTGTCGAAATTCGGTGAAAATTTGAAAGAGAAGAACGGTGGATCGTGGGTTTTGCGTGATTGTTTTGTTGCCGGAGTTCCGGGATCTTTCTATGGAAGATTGTTTCCTTGTAATAGTCTCCATTTTGTGCACTCTTCTTCAAGTCTCCATTGGCTTTCTCAGGTACCTCCAGAGCTGAATGAGAAAGGAAAGGGAATAAGAAACAAAGGGAAGATATTCATATCAAAGACAAGCCCAAGAGAAGTAATAGAAGCATATTATGGTCAATTCAAGAAGGATTTCAGTTGTTTTTTGAAGTCAAGATCAAAAGAAGTTGTGATTGGTGGGAGAATGGGGCTTATTGAAGAGGAAAAATTAGAGAGTTACAATACTCCTTACTATGAACCATATGTGGAAGATGTGAAAAGAGAGATAGAAAAAGAAGGGTCGTTCAAAATAGAGAATTTGGAAATAATTGCTTTGGCGTGGGATGGTGTGAATAGAGATGGTGAAATTTATGAAAGATCAAAAACAACTCAACAAATGGCAAAGGCAATTCAAGCAGTCAATGAATCTATGATAAGAACCCATTTTGGAGGTCATATTATTGAGCCATTGTTTAAGAGATTTAGAGATATCATGGAGGCTGATACTAAAGAAGTGGAGCATGTTAGTTTGGTTGTTTCTTTGGTTAGAATACAATAA 1017 42.58 MEEIQILETPKILRMNHGIGDRSYATNSISQSKYQSGSLPLLRRAVAALCAADLPTAIAVADLGCSSGPNALFAISEIVGVIHRRCCGDPPELMVFLNDLAENDFNSVFRGLSKFGENLKEKNGGSWVLRDCFVAGVPGSFYGRLFPCNSLHFVHSSSSLHWLSQVPPELNEKGKGIRNKGKIFISKTSPREVIEAYYGQFKKDFSCFLKSRSKEVVIGGRMGLIEEEKLESYNTPYYEPYVEDVKREIEKEGSFKIENLEIIALAWDGVNRDGEIYERSKTTQQMAKAIQAVNESMIRTHFGGHIIEPLFKRFRDIMEADTKEVEHVSLVVSLVRIQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16311016 16315333 - Lsi07G010920.1 Lsi07g01092 667514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01092 338 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 223 335 - -
Lsi07g01092 338 PANTHER JASMONATE O-METHYLTRANSFERASE-LIKE 10 223 - -
Lsi07g01092 338 Gene3D - 224 318 IPR042086 -
Lsi07g01092 338 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 223 335 IPR005299 GO:0008168
Lsi07g01092 338 PANTHER S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN 10 223 IPR005299 GO:0008168
Lsi07g01092 338 Gene3D Vaccinia Virus protein VP39 27 223 IPR029063 -
Lsi07g01092 338 Gene3D Vaccinia Virus protein VP39 235 266 IPR029063 -
Lsi07g01092 338 Gene3D - 13 196 IPR042086 -
Lsi07g01092 338 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 9 335 IPR029063 -
Lsi07g01092 338 Pfam SAM dependent carboxyl methyltransferase 47 224 IPR005299 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01092 K08241 E2.1.1.141; jasmonate O-methyltransferase [EC:2.1.1.141] K21483 csv:101211109 520.776
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00658 Lsi-Chr1:5302785 Lsi07g01092 Lsi-Chr7:16311016 2.03E-68 dispersed
Lsi01g00659 Lsi-Chr1:5306805 Lsi07g01092 Lsi-Chr7:16311016 2.58E-79 dispersed
Lsi04g01693 Lsi-Chr4:24317138 Lsi07g01092 Lsi-Chr7:16311016 2.06E-90 dispersed
Lsi07g00248 Lsi-Chr7:2717499 Lsi07g01092 Lsi-Chr7:16311016 2.78E-56 dispersed
Lsi07g01092 Lsi-Chr7:16311016 Lsi01g00657 Lsi-Chr1:5292389 1.77E-93 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1151 . . . . Bpe15g00481 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01245 . . . . . . . . . . . . . . . . . . . Lsi07g01092 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013465 1 0 0 2 1 1 0 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 0 0 1 1 1 1 3 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01092 Lsi_Chr07 FPKM 6.992079 8.995482 0.547706 0.68147 4.521293 2.9519 4.338279 0.0 0.0 0.094692