Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01094 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACCTCTCCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACATCCCCTCATAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTATTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACTATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCATATGGTCTTCGTCATGAACTGCTGCAACGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCTATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCGGAGCCACCCATTCATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCGAGACAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGCGTTACGACCGCACTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCTGCCAATGCTCCCCTGTTACGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACTTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACGGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAAGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAATTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAATGCATTAACCATAATGTGGAAACTGTACTAGATCTCTCTGACAACATGCCGAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTCAAGAAATGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGAAAAACTGTTTTCTCCACACCGTATAGGAATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTCGAGCAAGCAGATCCCTCGACAACCCGAACGTCTTGGACTATGCATTGTACGTACCTTGGTGAGTTTGACCTATCAAAATTTTTGCTTATTGCTCATCGGCTACGTCATACATGCTTAGAGCTCCTATCAAAGAAAAGAAAAAAAAAGAAAAACATATATGCTTTGAGCTTTTCCATCGGCATCTATCTAATTATTGAGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGTCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACGCCTGCAGACGCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGTATGGAGCTATGTTAAGAAAACAAACTTTTTTCAAGAACAGAAATCAAGCCAACACTGGTTTTGGCAAAGGAAATATTGTTTTCTCTTACATGGCTCATTTCTTAAAAACAAAAAATCATATTCTCGTTAATATTGATGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACATTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATGTTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTTCTTGATAAGTACTCTGGAAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAACGCCATAAAGATGGAGCTTCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAGATCAAAAATGATCCATATTTTGGAAGCTGTTATGAAGGACAGAAATGTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCAACATTTCAAGTCGGGGACAGCCAAGAAGAAACCACACCAAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCAATCGAGAGTAATGTGAGGACCGACGATCAGTGTGACACGAGACAAAACTCACCAATGCCTCAGTGTCAAAGTTCTGAGTCTAATGGACAGAACTTAGGATGCAACTATCCTAAAACCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACCATAATGCTCGAAAGGATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAAATGGACGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACGAGCCTTCACATTCCGATCGTTGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAGAGAAGACTCTAA 3969 41.52 MAEEDTPSESSSSSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRNTSPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLQEMGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCEKLFSPHRIGIDPSKWESVFESFEQADPSTTRTSWTMHCTYLGEFDLSKFLLIAHRLRHTCLELLSKKRKKKKNIYALSFSIGIYLIIEVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADATDHHCQFDFAKHNAVYGAMLRKQTFFKNRNQANTGFGKGNIVFSYMAHFLKTKNHILVNIDVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARSSENKKGFSPQDSLGETLRAELMRIKDMKSQMFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNVELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFQVGDSQEETTPKPCQSPFLPINNSLVELTHVHSIESNVRTDDQCDTRQNSPMPQCQSSESNGQNLGCNYPKTQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRL 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16326245 16332643 - Lsi07G010940.1 Lsi07g01094 667516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01094 1322 SMART HisKA_10 508 574 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 Pfam His Kinase A (phospho-acceptor) domain 509 574 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 ProSiteProfiles Histidine kinase domain profile. 515 824 IPR005467 -
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 797 843 - -
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 887 1319 - -
Lsi07g01094 1322 CDD REC_hyHK_CKI1_RcsC-like 1189 1314 - -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 797 843 - -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 740 - -
Lsi07g01094 1322 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 496 575 IPR036097 GO:0000155|GO:0007165
Lsi07g01094 1322 Gene3D - 1165 1320 - -
Lsi07g01094 1322 CDD HisKA 509 570 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 ProSiteProfiles Response regulatory domain profile. 1188 1318 IPR001789 GO:0000160
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 26 740 - -
Lsi07g01094 1322 Pfam Response regulator receiver domain 1189 1312 IPR001789 GO:0000160
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1 25 - -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1075 1112 - -
Lsi07g01094 1322 SUPERFAMILY CheY-like 1185 1320 IPR011006 -
Lsi07g01094 1322 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 563 738 IPR036890 -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1140 1165 - -
Lsi07g01094 1322 Gene3D - 496 575 - -
Lsi07g01094 1322 Gene3D - 576 826 IPR036890 -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 887 1319 - -
Lsi07g01094 1322 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 621 822 IPR003594 -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1136 1165 - -
Lsi07g01094 1322 SMART REC_2 1187 1314 IPR001789 GO:0000160
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01094 - - - csv:101217761 2190.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01094 Lsi-Chr7:16326245 Lsi11g00636 Lsi-Chr11:6707569 6.82E-07 dispersed
Lsi07g01094 Lsi-Chr7:16326245 Lsi11g01360 Lsi-Chr11:22210127 1.01E-30 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1138 Blo04g00878 Blo16g00087 . . Bpe15g00478 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0858 Cone12ag0821 . . . . . . . . . . . . Bma03g00954 . . . . Cma16g01243 . . . . . . . . . . . . . . . . . . . Lsi07g01094 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01094 . 30 1319 Histidine Kinase Gene Family AT2G17820 59.8 0.0e+00 1375.9
Lsi09g00708 CCT 175 1195 Histidine Kinase Gene Family AT2G01830 68.3 0.0e+00 1301.2
Lsi11g00010 . 18 923 Histidine Kinase Gene Family AT2G01830 65.2 0.0e+00 1187.9
Lsi09g01720 . 58 1018 Histidine Kinase Gene Family AT2G01830 53.0 6.3e-272 934.1
Lsi10g00055 . 304 1282 Histidine Kinase Gene Family AT2G01830 51.4 2.7e-267 918.7
Lsi04g01364 . 1 992 Histidine Kinase Gene Family AT5G10720 57.6 7.9e-295 1010.0
Lsi08g00755 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.9 0.0e+00 1830.5
Lsi11g01345 . 18 1112 Histidine Kinase Gene Family AT1G09570 55.1 0.0e+00 1214.1
Lsi05g01420 . 34 1120 Histidine Kinase Gene Family AT1G09570 54.8 0.0e+00 1199.5
Lsi08g00758 . 3 377 Histidine Kinase Gene Family AT1G09570 62.6 1.3e-142 504.6
Lsi05g01420 . 13 1061 Histidine Kinase Gene Family AT2G18790 79.2 0.0e+00 1676.8
Lsi02g00857 . 31 1051 Histidine Kinase Gene Family AT2G18790 60.4 0.0e+00 1238.0
Lsi08g00755 . 9 1054 Histidine Kinase Gene Family AT2G18790 52.9 0.0e+00 1087.8
Lsi11g01345 . 26 1069 Histidine Kinase Gene Family AT2G18790 52.5 0.0e+00 1079.3
Lsi11g01345 . 12 1116 Histidine Kinase Gene Family AT5G35840 61.5 0.0e+00 1363.6
Lsi05g01420 . 21 1122 Histidine Kinase Gene Family AT5G35840 53.0 0.0e+00 1153.7
Lsi08g00755 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.5
Lsi05g01420 . 3 1122 Histidine Kinase Gene Family AT4G16250 75.9 0.0e+00 1716.4
Lsi02g00857 . 32 1113 Histidine Kinase Gene Family AT4G16250 58.6 0.0e+00 1281.9
Lsi08g00755 . 8 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1132.9
Lsi11g01345 . 26 1115 Histidine Kinase Gene Family AT4G16250 52.6 0.0e+00 1121.3
Lsi02g00857 . 15 1129 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1372.5
Lsi05g01420 . 38 1120 Histidine Kinase Gene Family AT4G18130 59.0 0.0e+00 1271.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25668 PF02518 HATPase_c 7.00E-07 CL0025 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01094 Lsi_Chr07 FPKM 0.801498 0.686242 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0