Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01094 ATGGCAGAAGAGGATACCCCATCTGAAAGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTCTCACCTCTCCAATGTCCACTCCCTTGAGGAAGGTGTTTTGTAGAATTTCAGGCCTTGCAACTTCTCTGAGAAGAAACACATCCCCTCATAGCAGAAGAATCTTTCACAGAGATGTTGAACAACAAGAGTTTCAATATGCAAGCTCTCATTGCCTCTCTTCTTATTACAGTGTCTTTGTTGCTCGTCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACTATACTCACATGGCATTTCACGAAGAGCTACACAGCACAGTCTCTAGACAGCTTAGCATATGGTCTTCGTCATGAACTGCTGCAACGCCCGATCTTACGGATGTGGAGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAGGTTAAGCTCTCAGAATATGTAATGAGGAAGTACAGCAAGCCCGTGAATCAAGCAGAGCAAGTTGAGTTGTATGAAGCAATGAGGGACGTTACTTGGGCAATGTTTGCAAGTCGAAAAGCTCTTAATGCTATAACCATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACATTTTATATTTACTCAGATCTTGCAAACTATTCCATCAGTGCCACTCAATCATATAATATCAATCGGCTTTCGTCGGGTGAAGGGTGGTCGGAGCCACCCATTCATGGCAATGTTTCTGCAAAATGGTTCCGGGAACCGCTTGATCCTATTAGCGGTGAGAAGATCGGGAAAGCGAGACAAATCCCACCAGAGGACTTGATTAATATTGCTGGCATTTCACAGGTAGCAGATGGTGTTGCCTCATGGCATGTTACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCAGCTCTACCTGTTTCCGATGCTTCAAATGAAAGCATCGTTGCAGTGGTGGGCGTTACGACCGCACTTTATAGCGTAGGTCAACTTATGAAGGAGCTTGTTGAGTTCCACAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACTTCTGCCAATGCTCCCCTGTTACGAAATACATCAAGCGGTCCAAAGCTTATGATGGCTGTCGATTCCCAGGATGATGTGATTCGATTAGGAGCTGAGTGGTTACAGAAAACTTATGGAAACAATTTTCCTCCTGGTCATGAGGTCCATGAGGAGAATGTCAAGCTTGGTGATAAGCAATATTACATCGACTCGTTTTTTCTTAATCTAAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTACAAAACATTGGTTATACTGATTTCTGCATCCTTGTGCATCTTAGTTATTGGATGTCTATGCATTTTGATTCTGACGAAAGGAGTATCTAAGGAAATGAAACTAAGGGCAGAACTAATAAGCCATCTTGATGCAAGAAGAAGGGCGGAGGCATCTAGTAATTACAAGAGTCAATTTCTAGCGAATATGAGTCATGAACTGAGGACACCAATGGCTGCAGTAATTGGACTGCTGGACATTCTAATGTGTGATGACTGTCTCAATAATGAACAATTTTCGACGGTTACTCAGATTAGAAAATGCTCAACAGCTCTACTCCGACTTCTTAACAACATTCTAGATCTAAGCAAAGTTGAATCTGGAAAGCTGGTTTTGGAAGATGCAGAATTTGACCTGGGACGAGAACTCGAAGGGCTTGTTGATATGTTCTCTGTGCAATGCATTAACCATAATGTGGAAACTGTACTAGATCTCTCTGACAACATGCCGAAATTAGTTCGAGGAGACTCTGGTCGAGTTGTTCAAATATTCACAAACTTGATTAGCAATTCTATCAAATTCACAACTACTGGTCACATCATTCTTCGAGGGTGGTGTGAGACGTCAAATACTCTTCAAGAAATGGGAAAGTTCTGTATGGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACAACAGGGAGACCACACAAAGAATGCCTTCAAGAAAGATAACAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGAAAAACTGTTTTCTCCACACCGTATAGGAATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTCGAGCAAGCAGATCCCTCGACAACCCGAACGTCTTGGACTATGCATTGTACGTACCTTGGTGAGTTTGACCTATCAAAATTTTTGCTTATTGCTCATCGGCTACGTCATACATGCTTAGAGCTCCTATCAAAGAAAAGAAAAAAAAAGAAAAACATATATGCTTTGAGCTTTTCCATCGGCATCTATCTAATTATTGAGGTTAACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAAAACGGTCCGGGAACTCTAATGCGACTTTATTTGGTTCTCAGCACGCCTGCAGACGCCACAGATCATCACTGTCAGTTTGATTTTGCAAAACATAATGCGGTGTATGGAGCTATGTTAAGAAAACAAACTTTTTTCAAGAACAGAAATCAAGCCAACACTGGTTTTGGCAAAGGAAATATTGTTTTCTCTTACATGGCTCATTTCTTAAAAACAAAAAATCATATTCTCGTTAATATTGATGTACTGCTTGCACTCCGTGGCAGCATGAGTCGATTAATCACGTCACAGTGGCTTCGTAAAATCGGACTGTTCACTTTAGAGGCTTCAGAGTGGAATGAACTAACATTAATCCTTCAGGAACTCTTTCAAGCCAGAAGTTCTGAAAATAAAAAGGGATTTAGTCCACAGGATTCACTAGGTGAAACATTACGAGCTGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATGTTCATCATTGTTGCCGATATCGGGATACTGGACTTGAGCACGGATATTTGGAAGGACCAACTTTACTTTCTTGATAAGTACTCTGGAAAAGCAAAATTTGCCTGGATGTTAAACCACGATACGTCCAACGCCATAAAGATGGAGCTTCGGGGAAAAGGGCACATTATAATGAACAATAAGCCATTGTACAGATCAAAAATGATCCATATTTTGGAAGCTGTTATGAAGGACAGAAATGTTGAGTTGCAGAGGAAAAATGCTTTAAGAACTGCATCAAAAGAAGGGGATTATCATGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCCAGCTCTGATGATTCTGATGTATCTGAACTTGGAAATCCTAACTCTCAGTGTGCAACATTTCAAGTCGGGGACAGCCAAGAAGAAACCACACCAAAACCATGTCAGTCACCATTTCTGCCCATTAACAATAGTTTAGTCGAGTTAACTCATGTACATTCAATCGAGAGTAATGTGAGGACCGACGATCAGTGTGACACGAGACAAAACTCACCAATGCCTCAGTGTCAAAGTTCTGAGTCTAATGGACAGAACTTAGGATGCAACTATCCTAAAACCCAAGGAGAATCACATTCTAAGAACGTTCAAGGTAAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTCCAAAGAGTAACGACCATAATGCTCGAAAGGATGGGAGCCACGGTCATTGCTTTCGGAGACGGATTGCAGGCTGTTGAAGCTCTGACTGCCATGCTCAGTGCTGAAGAGCAAAGAAGGGAATTCCCCACAAGATATGACTTGATTTTAATGGATTGCCAAATGCCAAAAATGGACGGCTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGTGGGAACGAGCCTTCACATTCCGATCGTTGCATTGACAGCCCACGCAATGTCATCAGATGAAGCCAAATGCTTGGAGGTAGGAATGGATGCCTACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCCCTCACTCAGAGAAGACTCTAA 3969 41.52 MAEEDTPSESSSSSSSSSSSALTSPMSTPLRKVFCRISGLATSLRRNTSPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWSVLNSTAEITTAQVKLSEYVMRKYSKPVNQAEQVELYEAMRDVTWAMFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYNINRLSSGEGWSEPPIHGNVSAKWFREPLDPISGEKIGKARQIPPEDLINIAGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLRNTSSGPKLMMAVDSQDDVIRLGAEWLQKTYGNNFPPGHEVHEENVKLGDKQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAYKTLVILISASLCILVIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDNMPKLVRGDSGRVVQIFTNLISNSIKFTTTGHIILRGWCETSNTLQEMGKFCMDQKKSRFPNRTKMKQQGDHTKNAFKKDNKMTLWFELDDTGCEKLFSPHRIGIDPSKWESVFESFEQADPSTTRTSWTMHCTYLGEFDLSKFLLIAHRLRHTCLELLSKKRKKKKNIYALSFSIGIYLIIEVNKMGGEIKVVKKNGPGTLMRLYLVLSTPADATDHHCQFDFAKHNAVYGAMLRKQTFFKNRNQANTGFGKGNIVFSYMAHFLKTKNHILVNIDVLLALRGSMSRLITSQWLRKIGLFTLEASEWNELTLILQELFQARSSENKKGFSPQDSLGETLRAELMRIKDMKSQMFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTSNAIKMELRGKGHIIMNNKPLYRSKMIHILEAVMKDRNVELQRKNALRTASKEGDYHECLEIDSTQFETASSDDSDVSELGNPNSQCATFQVGDSQEETTPKPCQSPFLPINNSLVELTHVHSIESNVRTDDQCDTRQNSPMPQCQSSESNGQNLGCNYPKTQGESHSKNVQGKKSLEGLRILLAEDTPVLQRVTTIMLERMGATVIAFGDGLQAVEALTAMLSAEEQRREFPTRYDLILMDCQMPKMDGYEATKAIRKLEVGTSLHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTQRRL 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16326245 16332643 - Lsi07G010940.1 Lsi07g01094 667516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01094 1322 SMART HisKA_10 508 574 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 Pfam His Kinase A (phospho-acceptor) domain 509 574 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 ProSiteProfiles Histidine kinase domain profile. 515 824 IPR005467 -
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 797 843 - -
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 887 1319 - -
Lsi07g01094 1322 CDD REC_hyHK_CKI1_RcsC-like 1189 1314 - -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 797 843 - -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 26 740 - -
Lsi07g01094 1322 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 496 575 IPR036097 GO:0000155|GO:0007165
Lsi07g01094 1322 Gene3D - 1165 1320 - -
Lsi07g01094 1322 CDD HisKA 509 570 IPR003661 GO:0000155|GO:0007165
Lsi07g01094 1322 ProSiteProfiles Response regulatory domain profile. 1188 1318 IPR001789 GO:0000160
Lsi07g01094 1322 PANTHER OSMOSENSOR HISTIDINE KINASE 26 740 - -
Lsi07g01094 1322 Pfam Response regulator receiver domain 1189 1312 IPR001789 GO:0000160
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1 25 - -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1075 1112 - -
Lsi07g01094 1322 SUPERFAMILY CheY-like 1185 1320 IPR011006 -
Lsi07g01094 1322 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 563 738 IPR036890 -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1140 1165 - -
Lsi07g01094 1322 Gene3D - 496 575 - -
Lsi07g01094 1322 Gene3D - 576 826 IPR036890 -
Lsi07g01094 1322 PANTHER TWO-COMPONENT HISTIDINE KINASE 887 1319 - -
Lsi07g01094 1322 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 621 822 IPR003594 -
Lsi07g01094 1322 MobiDBLite consensus disorder prediction 1136 1165 - -
Lsi07g01094 1322 SMART REC_2 1187 1314 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01094 Lsi-Chr7:16326245 Lsi11g00636 Lsi-Chr11:6707569 6.82E-07 dispersed
Lsi07g01094 Lsi-Chr7:16326245 Lsi11g01360 Lsi-Chr11:22210127 1.01E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25668 PF02518 HATPase_c 7.00E-07 CL0025 Lsi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01094 - - csv:101217761 2190.62