Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01097 ATGGGAGAAGAGGGACGATCCTTGGCTGTTACCCCCACATGGGCTTTCGCCACAGTGGTCACTCTCATGGTTTCTCTTGGATTCTTCTTCCAAGGCACGTTGAAACGGACCAAAAAGTGGTTGAATAGGACGAAGAGAAAATCGTTACTCGCTGCGTTGGAGAAGATTAAAGAAGAGCTGATGCTCTTTGGACTTCTTTCGTTGTTGATGGGACACTGGATTGTTTTTGTTGCAAGAATTTGTGTTAAGTCGTCTATCTTGAGCAGCCGTTTCTATCCTTGTGCGTTGGAGGTTGATCTGAAACGAGTTAGACATATTTCTATTTCAAGTGAAAACTTGAACAGTTCTGTTCCAAGGGAGCATAATAATGCTGGGATACGAGAATATTGTCCTGAGGGTCGTGAATCATTTGCTTCATATGAAAGTTTAGAGCAGCTTCACCGATTAATTTTCGTTCTCGGTGTCACTCATGTTTCATATAGCTTCATTGCTATTGCCTTGGCTATGATTAAGATATATGGTTGGAGAGTGTGGGAAAATGAGGCTAAGGCTTTGGCCACTCGGAATGCTCAAGAAGAATCTGTACAAGCATCATCAACTGGACCAAACATAAGGCGACTATCAACTTTTGTCTTTCACCATACTTCTCATCCATGGAGTCAGCATAGAGTCCTTGTTTGGCTGCTCTGTTTCAGCCGCCAGTTTTGGAGTTCTATCAATCGAGCTGATTACATGGCTTTGCGGTTGGGATTTATCAGTACTCATGAACTTCCTATATCATATGACTTCCATAATTATATGCTTCGAAGCATGGACGATGAATTTCGCGATATGGTTGTTGTTTATTTTAGATTTTCTGCTACCTCAAGGTTTGTGTATCAGTCATGTTTGCTACCACAATGTGATAGTGAGCTTGCCAAGTTTGCTTTTCAAGGATGGCAGTCTACAAACCTCGTGCCACTATGGATATATGCCATTGCTTGCATCTTCCTCAACTTTCATGGAAGCAACATTTACTTTTGGCTTTCCTTTCTCCCTGCAATTTTGATTCTGCTAATCGGGACGAAACTGCATCGGGTAGTGGTAAAGTTGGCTGTAGAAGTTGTGGATACATCTCCAAGGGGATATTATCGTTTTAACTTGAGGGATGAGCTGTTTTGGTTTGGGAAGCCCAAGCTTCTTTTATGGTTGATACAATTTATATCCTTTCAGAATGCTTTTGAGATGGCTACATTTATTTGGTCCCTGTGGGAAATTAAGGAACCTTCTTGTTTCATGGATAACGAAACATACGTTGGTATCCGCTTGGCCTTTGGGGTTATCACTCAGTTTTGGTGTAGCTTCATTACATTCCCACTCTATGTTATAGTAACTCAGATGGGGTCGAAGGTCAAGAAATCACTTGTGTCGGAGAATGTCCGAAACTCTCTTCATCAATGGAAAAGAAGAGTGAAGGCAAGGCCGGGTGTTTCTTCCTCAGTTGCACTTGTGGGTGCAACATCACTTTCATCCTCTGTTTGTACAATGGATGATGACGGTCAGGTGATCGACGACTTTACCGTGAACTGCTCGGAAGGAAGCACATCAAACTCTGCCCAAGACATGCATTTCTCCCAGTTACTTCAGCAAGCTTCATCGGACGACACGGGCGTACAAATATCTGTTAGTTCTAGTCCTCCTCACATTACTTCCAACAACAACAAAGAAGGCAATGAGGATCGTTGA 1725 42.61 MGEEGRSLAVTPTWAFATVVTLMVSLGFFFQGTLKRTKKWLNRTKRKSLLAALEKIKEELMLFGLLSLLMGHWIVFVARICVKSSILSSRFYPCALEVDLKRVRHISISSENLNSSVPREHNNAGIREYCPEGRESFASYESLEQLHRLIFVLGVTHVSYSFIAIALAMIKIYGWRVWENEAKALATRNAQEESVQASSTGPNIRRLSTFVFHHTSHPWSQHRVLVWLLCFSRQFWSSINRADYMALRLGFISTHELPISYDFHNYMLRSMDDEFRDMVVVYFRFSATSRFVYQSCLLPQCDSELAKFAFQGWQSTNLVPLWIYAIACIFLNFHGSNIYFWLSFLPAILILLIGTKLHRVVVKLAVEVVDTSPRGYYRFNLRDELFWFGKPKLLLWLIQFISFQNAFEMATFIWSLWEIKEPSCFMDNETYVGIRLAFGVITQFWCSFITFPLYVIVTQMGSKVKKSLVSENVRNSLHQWKRRVKARPGVSSSVALVGATSLSSSVCTMDDDGQVIDDFTVNCSEGSTSNSAQDMHFSQLLQQASSDDTGVQISVSSSPPHITSNNNKEGNEDR 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16356654 16362192 - Lsi07G010970.1 Lsi07g01097 667519

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01097 574 Pfam Mlo family 319 495 IPR004326 GO:0006952|GO:0016021
Lsi07g01097 574 Pfam Mlo family 6 281 IPR004326 GO:0006952|GO:0016021
Lsi07g01097 574 PANTHER MLO-LIKE PROTEIN 3 282 - -
Lsi07g01097 574 PANTHER MLO-LIKE PROTEIN 1 3 282 IPR004326 GO:0006952|GO:0016021
Lsi07g01097 574 PANTHER MLO-LIKE PROTEIN 1 319 541 IPR004326 GO:0006952|GO:0016021
Lsi07g01097 574 MobiDBLite consensus disorder prediction 543 566 - -
Lsi07g01097 574 MobiDBLite consensus disorder prediction 543 574 - -
Lsi07g01097 574 PANTHER MLO-LIKE PROTEIN 319 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01097 K08472 MLO; mlo protein - csv:101217051 964.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi05g00163 Lsi-Chr5:2369569 Lsi07g01097 Lsi-Chr7:16356654 1.42E-20 dispersed
Lsi07g01097 Lsi-Chr7:16356654 Lsi04g00059 Lsi-Chr4:739689 6.58E-83 dispersed
Lsi07g01097 Lsi-Chr7:16356654 Lsi04g01324 Lsi-Chr4:21042641 4.38E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1131 Blo04g00881 Blo16g00083 . . Bpe15g00475 Bpe13g00411 . Bma15g00911 . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0818 . . . . . . . . Bda11g01831 . . . Bma03g00957 . . . . Cma16g01241 . . . . . . . . . . . . . . . . . . . Lsi07g01097 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006348 3 0 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01097 Lsi_Chr07 FPKM 20.651228 20.298618 16.017838 17.89212 42.524666 42.946316 43.415287 2.202959 2.011939 1.891999