Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01099 ATGGACTTGTTTGGGAATCACTCTGTTTCTTGTTCCATTTTCTTGGTCTTCTCTGTTCTCTTAATTTTCCATGGGGCTTTTGGAGCTAAATTTACATTTGTCAACAAGTGCGATTTTACAGTTTGGCCGGGAATTCTCTCTGGCGCCGGCAGTTTGAAGTTCGACACCACTGGTTTCGAGCTTCGAAAGGGAAGTTCAAGGTCTTTTCAAGCGCCGGCAGGCTGGTCCGGCCGCTTCTGGGGTCGAACCGGCTGTAGCTTTGATGGCGCTGGCCGTGGTGCCTGTACTACAGGGGATTGTGGGTCCGGCGAAATTGAGTGCAACGGCGCTGGAGCCGCACCGCCGGCGACTCTGGCGGAGTTCACTCTTGGGTCTGGCGCTGCTGCTGCCTCGCCAGATTTTTACGATGTCAGCCTAGTCGACGGGTACAATTTGCCGATGATCGTTGAGGGGACCGGTGGAACAGGTGCGTGTGGGTCGACCGGGTGCGTGACGGACTTGAACCGGCAGTGTCCAGCGGAGCTCAAAGCAGAGAACGGCGGCGCGTGTAGAAGCGCGTGTGAGAAGTTTGGGACGCCGGAATACTGCTGTAGTGGCGCGTATGGTTCACCGACGACCTGTAAACCGTCGAAATACTCAGAGATATTCAAATCGGCTTGTCCGCGATCGTATAGCTACGCCTACGATGACGCCACCAGCACTTTCACTTGCTCCGGCGCCGATTATACCGTCACATTTTGCCCTTCGTCTCCAAGGTAG 759 55.07 MDLFGNHSVSCSIFLVFSVLLIFHGAFGAKFTFVNKCDFTVWPGILSGAGSLKFDTTGFELRKGSSRSFQAPAGWSGRFWGRTGCSFDGAGRGACTTGDCGSGEIECNGAGAAPPATLAEFTLGSGAAAASPDFYDVSLVDGYNLPMIVEGTGGTGACGSTGCVTDLNRQCPAELKAENGGACRSACEKFGTPEYCCSGAYGSPTTCKPSKYSEIFKSACPRSYSYAYDDATSTFTCSGADYTVTFCPSSPR 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16390594 16391757 - Lsi07G010990.1 Lsi07g01099 667521

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01099 252 PANTHER OS03G0233200 PROTEIN 10 251 IPR001938 -
Lsi07g01099 252 Gene3D Thaumatin 29 248 IPR037176 -
Lsi07g01099 252 ProSitePatterns Thaumatin family signature. 91 107 IPR017949 -
Lsi07g01099 252 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 251 - -
Lsi07g01099 252 CDD TLP-PA 30 247 - -
Lsi07g01099 252 PIRSF PR5 3 252 IPR001938 -
Lsi07g01099 252 SUPERFAMILY Osmotin, thaumatin-like protein 30 249 IPR037176 -
Lsi07g01099 252 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Lsi07g01099 252 PRINTS Pathogenesis-related protein signature 78 89 IPR001938 -
Lsi07g01099 252 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Lsi07g01099 252 PRINTS Pathogenesis-related protein signature 91 120 IPR001938 -
Lsi07g01099 252 Pfam Thaumatin family 35 248 IPR001938 -
Lsi07g01099 252 ProSiteProfiles Thaumatin family profile. 28 248 IPR001938 -
Lsi07g01099 252 SMART tha2 31 248 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01099 - - - csv:101216581 458.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00594 Lsi07g01099 CCT
Lsi01g00594 Lsi07g01099 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02594 Lsi-Chr2:32362384 Lsi07g01099 Lsi-Chr7:16390594 2.83E-88 dispersed
Lsi04g00468 Lsi-Chr4:4408842 Lsi07g01099 Lsi-Chr7:16390594 2.39E-48 dispersed
Lsi07g01099 Lsi-Chr7:16390594 Lsi10g00480 Lsi-Chr10:6929595 1.85E-124 dispersed
Lsi07g01099 Lsi-Chr7:16390594 Lsi07g01100 Lsi-Chr7:16405759 2.36E-100 tandem
Lsi08g01419 Lsi-Chr8:22439427 Lsi07g01099 Lsi-Chr7:16390594 1.95E-86 transposed
Lsi09g01041 Lsi-Chr9:15542081 Lsi07g01099 Lsi-Chr7:16390594 3.31E-75 transposed
Lsi01g00594 Lsi-Chr1:4740368 Lsi07g01099 Lsi-Chr7:16390594 3.69E-134 wgd
Lsi04g01754 Lsi-Chr4:24798564 Lsi07g01099 Lsi-Chr7:16390594 1.08E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1122 . . . . Bpe15g00474 . . . . . . Cma07g00422 Car03g00627 . Sed11g1095 Cpe19g00864 . Bhi03g00860 Tan03g2090 Cmetu03g1857 . Hepe04g1597 . . Cla01g01986 Cam01g2080 Cec04g1739 Cco04g1805 Clacu01g2102 Cmu01g1977 Cre04g1653 Cone8ag0854 . . Cone9ag1609 Lsi01g00594 . . Cme08g00938 . . Bda11g01832 . Bpe10g00159 Bpe06g00130 . . Sed05g3597 . Cmo07g00418 . Cma20g00763 . . . . Bhi10g01869 Tan05g1161 . . Hepe08g0278 . . . . . . . . . Lsi07g01099 Csa06g03334 Chy02g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000476 2 3 3 3 2 4 4 4 4 5 4 4 6 4 4 5 4 4 4 4 4 4 4 4 4 4 3 5 4 3 116
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01099 Lsi_Chr07 FPKM 7.985556 8.984904 11.696186 8.950579 10.758578 11.314148 12.983827 4.986582 4.621614 5.949189