Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01103 ATGGCCGCCGCAGTAACTGCCGCTGTTTCTTTCCCTTCTAAATCCTCTTCTCTCCCTTCCAGAACTCCTCTAATTTCCCCCGACAGAATCTCCCTCAAGAAGGTTCCGGTGTTTTACCATGGCGGAAGAGCGTCGGTGGGTCCGATTAGAGCTCAAGTGACCACGGAGGCTCCGGCGAAGGTGGAGAAAGAATCGAAGAAGCAAGAGGAAGGAATTGTGGTGAATAAGTTTAAACCTAAGAGTCCTTACGTTGGACGATGCCTTTTGAACACCAAGATCACCGGCGATGATGCTCCCGGCGAGACTTGGCATATGGTCTTCAGTACTGAAGATGGAGAGGACAAGAATGGGAAGCCTCACAAATTGAGATTATACTCTATTGCCAGCAGTGCCCTTGGTGACTTTGGTGACTCCAAGACTGTTTCTCTATGTGTGAAGAGGCTGGTGTACACCAATGAACAAGGAGAGATTGTCAAAGGAGTTTGCTCTAACTTTTTATGTGACCTAAAACCTGGAGCTGAGGTGAAGATAACAGGACCTGTGGGAAAAGAAATGCTTATGCCTAAAGATCCCAATGCTACAGTTATCATGCTTGCAACTGGAACTGGAATTGCTCCATTCAGATCATTTTTGTGGAAAATGTTCTTTGAGAAGCATGAAGACTACGAGTTCAATGGTTTGGCATGGCTCTTCTTGGGTGTCCCAACAAGTAGCTCACTTCTTTACAAAGAGGTAAAAATGAGAAACCCCTATTATTGCAATCTCAAAATCTATAATAGCTTCATCGAACCAAAACCCGATAAACACGTAGAAGAAAATGAGTTTGAAAAAATGAAAGAGAAGTATCCCGATAACTTTAGGTTAGACTTTGCGGTTAGTCGAGAGCAAACGAACGAGCAAGGGGAGAAAATGTACATTCAAACTAGAATGGCTCAGTATGCTGAGGAGCTTTGGGAATTATTGAAGAAGGATAATACCTTTGTCTACATGTGTGGACTTAAGGGCATGGAGAAGGGAATTGATGACATTATGGTCTCTTTGGCTGCTAGAGATGGTATTGATTGGCTGGAATACAAGAGGCAATTGAAGAAATCAGAGCAATGGAATGTGGAAGTTTATTAA 1122 43.49 MAAAVTAAVSFPSKSSSLPSRTPLISPDRISLKKVPVFYHGGRASVGPIRAQVTTEAPAKVEKESKKQEEGIVVNKFKPKSPYVGRCLLNTKITGDDAPGETWHMVFSTEDGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNEQGEIVKGVCSNFLCDLKPGAEVKITGPVGKEMLMPKDPNATVIMLATGTGIAPFRSFLWKMFFEKHEDYEFNGLAWLFLGVPTSSSLLYKEVKMRNPYYCNLKIYNSFIEPKPDKHVEENEFEKMKEKYPDNFRLDFAVSREQTNEQGEKMYIQTRMAQYAEELWELLKKDNTFVYMCGLKGMEKGIDDIMVSLAARDGIDWLEYKRQLKKSEQWNVEVY 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16422076 16426919 - Lsi07G011030.1 Lsi07g01103 667525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01103 373 Gene3D - 182 373 IPR039261 -
Lsi07g01103 373 MobiDBLite consensus disorder prediction 1 25 - -
Lsi07g01103 373 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 46 187 IPR017927 GO:0016491
Lsi07g01103 373 SUPERFAMILY Riboflavin synthase domain-like 59 188 IPR017938 -
Lsi07g01103 373 PIRSF FNR-PetH 261 373 IPR035442 GO:0016491
Lsi07g01103 373 PIRSF FNR-PetH 33 260 IPR035442 GO:0016491
Lsi07g01103 373 MobiDBLite consensus disorder prediction 9 24 - -
Lsi07g01103 373 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 1, CHLOROPLASTIC 1 255 - -
Lsi07g01103 373 PANTHER FERREDOXIN--NADP REDUCTASE, LEAF ISOZYME 1, CHLOROPLASTIC 272 373 - -
Lsi07g01103 373 Pfam Oxidoreductase NAD-binding domain 266 340 IPR001433 GO:0016491
Lsi07g01103 373 Pfam Oxidoreductase NAD-binding domain 197 244 IPR001433 GO:0016491
Lsi07g01103 373 PANTHER - 1 255 IPR015701 GO:0016491
Lsi07g01103 373 PANTHER - 272 373 IPR015701 GO:0016491
Lsi07g01103 373 PIRSF Frd-NADP+_RD 262 373 IPR015701 GO:0016491
Lsi07g01103 373 PIRSF Frd-NADP+_RD 1 258 IPR015701 GO:0016491
Lsi07g01103 373 Gene3D Translation factors 50 181 - -
Lsi07g01103 373 CDD CYPOR_like_FNR 75 373 - -
Lsi07g01103 373 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 160 169 IPR001709 GO:0016491
Lsi07g01103 373 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 196 215 IPR001709 GO:0016491
Lsi07g01103 373 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 226 235 IPR001709 GO:0016491
Lsi07g01103 373 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 123 130 IPR001709 GO:0016491
Lsi07g01103 373 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 190 373 IPR039261 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01103 K02641 petH; ferredoxin--NADP+ reductase [EC:1.18.1.2] - csv:101216095 634.795
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00083 Lsi-Chr1:809182 Lsi07g01103 Lsi-Chr7:16422076 1.54E-69 dispersed
Lsi07g01103 Lsi-Chr7:16422076 Lsi11g00758 Lsi-Chr11:8534882 8.82E-10 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1118 . Blo16g00081 . . . Bpe13g00414 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1685 Cone9ag1607 . . . . . . Bda11g01835 . . . . Bma06g00095 . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01103 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009581 1 0 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01103 Lsi_Chr07 FPKM 5.983243 5.908139 0.385341 0.327212 25.010073 23.704817 25.276119 0.105921 0.060525 0.0