Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01105 ATGGCTTCTTCCACAACTCTCACTGCTCTTGCAGACCAGCCGGTTCTTCCGCCTGATTTCCTCCGCCACCAGGACGACCGTCCCAAAGTCCCTTACAACCATTTCACCAATGAAATTCCGATCATCTCCCTTGCCGGAATCGATGGCGAACGCAGGGCCGAGATTTGCCGGAGCATCGTTGACGCTTGCGAGGACTGGGGGATCTTTCAGGTTGTTGACCATGGCGTCGATTGGGAGATTGTTTCCGATATGACTCGTCTCGCTCTAGACTTCTTTGCCCTTCCGCCGGAGGAGAAACTCCGTTTCGACATGTCCGGCGGTAAGAAGGGCGGATTTATCGTCTCTAGTCATCTCAAGGGAGAAGTTGTTAAAGATTGGCGTGAGATAGTAACCTACTTCTCATACCCAATTAAAAACAGAGACTACTCTCTGTGGCCGGACAAGCCGGAGGGGTGGGCGGCAAAGACGGCGGAGTACAGCGAGAAGCTAATGGGGTTGGGCTGTAAGCTTTTGGAGGTTTTATCAGAAGCCATGGGTTTGGAGAAGGAGGCCTTAACGAAGGCTTGTGTGGACATGGATCAGAAGATTGTTATAAATTTCTATCCCAAATGTCCTGAGCCAGACCTCACTTTGGGGCTAAAACGCCACACTGATCCTGGAACCATAACGTTGTTGTTACAAGACCAAGTCGGCGGGCTTCAGGCCACCAAGGACGGTGGCCGGACGTGGATCACAGTCCAGCCCGTCAAAGGAGCCTTCGTCGTCAACTTGGGAGACCATGGCCATTATCTTAGCAATGGGAGGTTCAAGAATGCTGATCATCAAGCAGTAGTGAACTCAAAGTCAAGCAGGCTATCAATAGCCACATTTCAAAACCCTTCACAAGAAGCCATTGTATATCCATTGAAGATCAGAGATGGGGAGAAGCCAATTCTTGAGAAGCCCATCACTTTTGCTGAGATGTATCAGATGAAGATGAGCAAGGACATTGAGCTTGCAAGGCTTAAGAAGCAAGCCCAAGAACAAGCCCGTAAGTTTGTTGGATAA 1047 49.95 MASSTTLTALADQPVLPPDFLRHQDDRPKVPYNHFTNEIPIISLAGIDGERRAEICRSIVDACEDWGIFQVVDHGVDWEIVSDMTRLALDFFALPPEEKLRFDMSGGKKGGFIVSSHLKGEVVKDWREIVTYFSYPIKNRDYSLWPDKPEGWAAKTAEYSEKLMGLGCKLLEVLSEAMGLEKEALTKACVDMDQKIVINFYPKCPEPDLTLGLKRHTDPGTITLLLQDQVGGLQATKDGGRTWITVQPVKGAFVVNLGDHGHYLSNGRFKNADHQAVVNSKSSRLSIATFQNPSQEAIVYPLKIRDGEKPILEKPITFAEMYQMKMSKDIELARLKKQAQEQARKFVG 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16437375 16446406 - Lsi07G011050.1 Lsi07g01105 667527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01105 348 Coils Coil 336 348 - -
Lsi07g01105 348 Pfam 2OG-Fe(II) oxygenase superfamily 194 292 IPR044861 -
Lsi07g01105 348 PANTHER NARINGENIN,2-OXOGLUTARATE 3-DIOXYGENASE 9 342 - -
Lsi07g01105 348 Gene3D - 7 332 IPR027443 -
Lsi07g01105 348 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 189 293 IPR005123 -
Lsi07g01105 348 SUPERFAMILY Clavaminate synthase-like 10 328 - -
Lsi07g01105 348 Pfam non-haem dioxygenase in morphine synthesis N-terminal 39 147 IPR026992 -
Lsi07g01105 348 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 9 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01105 K00475 F3H; naringenin 3-dioxygenase [EC:1.14.11.9] - csv:101215613 585.489
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01105 Lsi-Chr7:16437375 Lsi09g00122 Lsi-Chr9:1179892 9.84E-63 dispersed
Lsi07g01105 Lsi-Chr7:16437375 Lsi04g00983 Lsi-Chr4:10565049 3.75E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
Vvi4g1112 Blo04g00885 Blo16g00079 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma03g00961 . . . . Cma16g01237 . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002095 5 1 3 3 2 2 2 2 2 2 2 2 2 2 1 1 2 2 2 2 2 1 1 3 3 1 3 5 1 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01105 Lsi_Chr07 FPKM 16.952381 16.13023 17.553526 19.500671 5.915172 6.815655 7.321657 16.729742 19.878313 12.542412