Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01106 ATGGAGACTCCATCCTCGATCCGCCGTGTAACTAGGTCCCAAACGCTCACCGCCGCAAACTCCGCCAACAACAGCAACATTTCCATCTCAAGGAAGGTTGAGGAGTGTGACAACAATGGCTTATCGAAATCCCGACAAAGGAATAGAAAGTCGCAAGATTTGGCCGGGGCAAAAGGGCAAGATCGGTCGGTGCTTATTGACATTACCAACGACTCCCCGATCGTCGGCTTGGCTGTGGGGAATCTGATGACGCCGATTTCATCGGTGACTAAACAGAGGAGCTACCGGCCTAAGATGATGACGCCTGGTTCAGGGGAAGCCTTATTGAGAGGGCAAGTGAAAACCCTTTTGCAGAAAGTGGAAGAAGAAGCTGAAATTTCTAAGCTTTCTTTAGAAAGCCGGCCGTTTGTTCATCTTCAGTCCCCGGCCGGACTTCTCGCCCCGACCCCGGCCAACACGCCACAGATCTTGAATATCTCTCAGGATGGAAATCTTTGCAGTATCACAAATCATCCCATTGTTGAAGAACAGATGATCTCTCAGGTTGTGGTTGATATTGATCTGTTTAATGGAAAGGAACAAGAAGAGAGTCAGATTAATAGGTCACTTTTGCTGGATTTTTCTGAGAAATCTGAAACAATTGATGATGAAGCTACATCATCAGATTGCTCCTCTGTTCTTGCCCACCACGACAAGTCGTCGTTGTCGTTGTCGCCGTCCCAAGATGACGACAACTCCTCTTTGTGGTCGATTCAAGTGAATGCAAGCAGACATGGTGAAGACGAGGACGTGGAGGAAGAAGAGCGAATCGAAGACGAGGAAGAGGAAGAGGAAGAAGGAGATGACGAGAACGACGACGGGGGGTTGGTAGATGAGCTATGCAAGGGACTTAGTAAGATAAGTGTGAATGAGAAGGGAAAAGCGGAGGAATTTGTAGGGAAACACACGAGGTTCGTGTATGATAGCGAAGATGAAATGATTGAGGAAGTTAGTGATGAGAGCCATGGCGGGGTTTCACCGAGCGTCCTTTGTCTGAAGGGAATGCCGACGCCCAAAGGGAAACATTTGCGGTTTCAGTCCGAGGACGATTCATCAATTTCTTCTCACCCTTCATTTCCGTTACTGCAGATGGCATCAGACCACTACACGTTTGGGCGTTACAAGATTGATCCGAAGGAAGTATTCTACTGCACCACTCTCTCTTACGCCATGGTCAACCTCCGTCCTCTTGTTCCTGGCAATTGTGTTTTAACAGTATTTTGTGATGGAGTTTTGCAAGGGGCGGGTGGTACAAAACTTATTTATGAAGTCTTTTGCAAATCGTCTGGTGGAATATTTAGTTTAGGGTGGTATAGGGATCCTAAAATCAGAATAGTTTTTCATTGGAGTACGGGAATGTGGATGGAGTGGAGTAGAGAGCGTGAAGTTCAGCGCTTTGCTGATCTCACTGCTGATGAGACTTGTGATCTATGGCTCGCAGCACAGCTGGTTGGTCGTCAGCTAGAGTTGTACCATAAAGCTACATCACTCACATTTGCAATTCAAGACGGCCCTCAGGCAGGACAAACTGTACCCCATGTTCACATTCATATTCTCCCAAGGAAGGGTGGTGATTTTGAGAAAAATGATGAGATTTATGATGCTATTGACGAGAAGGAGAAAGAATTGAAGCAACATCTTGATTTGGACAAGGAGAGGAAAGATAGAGACATGGAAGAGATGGCTGAAGAGGCAGACCAGTACAGAAAGCTTTTGTTGTAA 1761 46.62 METPSSIRRVTRSQTLTAANSANNSNISISRKVEECDNNGLSKSRQRNRKSQDLAGAKGQDRSVLIDITNDSPIVGLAVGNLMTPISSVTKQRSYRPKMMTPGSGEALLRGQVKTLLQKVEEEAEISKLSLESRPFVHLQSPAGLLAPTPANTPQILNISQDGNLCSITNHPIVEEQMISQVVVDIDLFNGKEQEESQINRSLLLDFSEKSETIDDEATSSDCSSVLAHHDKSSLSLSPSQDDDNSSLWSIQVNASRHGEDEDVEEEERIEDEEEEEEEGDDENDDGGLVDELCKGLSKISVNEKGKAEEFVGKHTRFVYDSEDEMIEEVSDESHGGVSPSVLCLKGMPTPKGKHLRFQSEDDSSISSHPSFPLLQMASDHYTFGRYKIDPKEVFYCTTLSYAMVNLRPLVPGNCVLTVFCDGVLQGAGGTKLIYEVFCKSSGGIFSLGWYRDPKIRIVFHWSTGMWMEWSREREVQRFADLTADETCDLWLAAQLVGRQLELYHKATSLTFAIQDGPQAGQTVPHVHIHILPRKGGDFEKNDEIYDAIDEKEKELKQHLDLDKERKDRDMEEMAEEADQYRKLLL 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16449182 16455736 + Lsi07G011060.1 Lsi07g01106 667528

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01106 586 MobiDBLite consensus disorder prediction 264 288 - -
Lsi07g01106 586 Pfam HIT domain 474 535 IPR011146 GO:0003824
Lsi07g01106 586 MobiDBLite consensus disorder prediction 254 290 - -
Lsi07g01106 586 PANTHER EXPRESSED PROTEIN 1 363 - -
Lsi07g01106 586 CDD FHIT 384 555 IPR039383 -
Lsi07g01106 586 ProSiteProfiles HIT domain profile. 474 541 IPR011146 GO:0003824
Lsi07g01106 586 PANTHER EXPRESSED PROTEIN 1 363 - -
Lsi07g01106 586 SUPERFAMILY HIT-like 474 585 IPR036265 -
Lsi07g01106 586 ProSitePatterns HIT domain signature. 515 533 IPR019808 -
Lsi07g01106 586 Gene3D - 380 585 IPR036265 -
Lsi07g01106 586 Coils Coil 542 586 - -
Lsi07g01106 586 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01106 - - - csv:101215376 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01106 Lsi-Chr7:16449182 Lsi07g01387 Lsi-Chr7:20136966 5.84E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1110 . Blo16g00077 . . . Bpe13g00418 . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0849 Cone12ag0717 . . . . . . . . Bda11g01839 . . . . Bma06g00098 . . . Cma16g01236 . . . . . . . . . . . . . . . . . . . Lsi07g01106 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008901 1 0 1 1 1 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01106 Lsi_Chr07 FPKM 14.832842 15.258185 10.765412 11.803496 14.191559 14.057107 12.472812 5.758411 5.177963 4.977546