Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01112 ATGTCGCCTACTCCCGAGGAACCTAATAATTTGCAGAACGGAATCGAAACCCAACCACACATTTCGCCAGAATCAGATCAGACTAGTGAGCACAGATCAGAGCCAGAACCCACAGCAGATGCAATTCCCAGTTCTGAATTACAACAAGAACGCGAATCGGAATCAGTTAATAATGGAGTAGCAGATTCGGAGCCGGAGTCTCGAAGGAAACAGTTATCGGAGTCCATCCATTTACAGGTAGTGACGGATGTTACAGATCCGAGGTTTGAAGAGCACAAAGAAACCTCCATCCCATCCAACGGCAACACCGAGAACTCGCAACCTGCGTTGCGTAAAGACGAAGGAAGCCGAACATTTACAATGAGAGAGTTGCTGAATGGATTGAAAGGTGAAGATGGTAACGACAGCCTTAACGAATCTGAAGGCGAGAGGCCCGAGGGGAACTCCGGTTACAGTCTTAATCAAGATAGCCCACATCAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTAATCAACAGTGTTACAGGTGTCGATGAAGAGGGTCGTTCTCGCCAAAGGATTCTCACATTTGCTGCTAGGAGGTATGCTAGTGCAATTGAGAGAAATGGTCAAGACTATGACGCTCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGATAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAGTATGATGAAGCTACCCGTCTTTGCCCAACACTTCATGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGGGCCAAAATGCGTGGTCGTACAAAGGAGGCCGAAGAACTGTGGAAGCAGGCTACCCAAAATTATGAAAAAGCTGTCCAACTCAACTGGAATAGTCCCCAGGCACTAAATAATTGGGGGCTTGCTCTCCAGGAACTCAGTGCAATTGTGCCAGCACGAGAAAAGCAGACAATTGTAAAAACAGCTATCAATAAGTTCCGTGCTGCTATACAGTTGCAATTTGATTTTCATCGAGCAATCTACAACCTTGGTACTGTTCTGTATGGATTAGCTGAGGACACATTAAGGACTGGTGGAACGGGAAATGTTAAGGATGTTTCCCCTAATGAGTTATACAGCCAATCTGCAATTTATATTGCAGCTGCTCATGCTCTAAAACCAAATTACTCTGTTTACAGCAGTGCCTTGCGATTGGTCCGTTCGATGCTGCCGTTACCCTATCTAAAAGTTGGATACTTGACTGCACCTCCTCTGGGGAGACCACTGGCTCCTCACAGTGATTGGAAACGTTCACAATTTTTTCTAAATCATGATGTATTGCAAAAGCTTAACATAGGAGGGGAACAAATACAAACATCCCCTAGTATTTTAGGAAGATCTGGAAGTACCTTGAATGGCAACAGGGCAATCAAAGTAGAAATCCCTGATATTGTCTCTGTATCAGCATGTGCAGATTTAACTTTACCACCTGGTGCTGGACTCTGCATTGACACAATCCATGGACCAGTTTTCTTGGTTGCTGACTCATGGGACGCACTCGATGGATGGCTCGATGCAATTAGATTAGTTTACACGATCTACGCTCGAGGCAAAAACGAGGTTTTGGCTGGCATCATAGCAGGTTGA 1650 45.03 MSPTPEEPNNLQNGIETQPHISPESDQTSEHRSEPEPTADAIPSSELQQERESESVNNGVADSEPESRRKQLSESIHLQVVTDVTDPRFEEHKETSIPSNGNTENSQPALRKDEGSRTFTMRELLNGLKGEDGNDSLNESEGERPEGNSGYSLNQDSPHQPYSEQSRAAMELINSVTGVDEEGRSRQRILTFAARRYASAIERNGQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATQNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVKTAINKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGNVKDVSPNELYSQSAIYIAAAHALKPNYSVYSSALRLVRSMLPLPYLKVGYLTAPPLGRPLAPHSDWKRSQFFLNHDVLQKLNIGGEQIQTSPSILGRSGSTLNGNRAIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPVFLVADSWDALDGWLDAIRLVYTIYARGKNEVLAGIIAG 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16557155 16567146 + Lsi07G011120.1 Lsi07g01112 667534

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01112 549 MobiDBLite consensus disorder prediction 1 24 - -
Lsi07g01112 549 PANTHER - 10 548 - -
Lsi07g01112 549 SUPERFAMILY TPR-like 193 315 IPR011990 GO:0005515
Lsi07g01112 549 PANTHER PROTEIN HLB1 10 548 - -
Lsi07g01112 549 MobiDBLite consensus disorder prediction 98 113 - -
Lsi07g01112 549 Gene3D Tetratricopeptide repeat domain 178 298 IPR011990 GO:0005515
Lsi07g01112 549 Gene3D Tetratricopeptide repeat domain 299 414 IPR011990 GO:0005515
Lsi07g01112 549 MobiDBLite consensus disorder prediction 1 165 - -
Lsi07g01112 549 MobiDBLite consensus disorder prediction 143 165 - -
Lsi07g01112 549 Pfam Plant specific mitochondrial import receptor subunit TOM20 190 296 - -
Lsi07g01112 549 MobiDBLite consensus disorder prediction 42 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01112 - - - csv:101213929 1034.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00327 Lsi-Chr1:2876545 Lsi07g01112 Lsi-Chr7:16557155 4.36E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009993 1 0 0 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01112 Lsi_Chr07 FPKM 13.067318 15.746844 18.297207 18.987633 19.222198 24.086195 18.513338 20.171293 19.989552 21.890528
Lsi07g01112 Lsi_Chr00 FPKM 19.136265 17.586597 29.09655 26.535368 23.120712 24.936983 22.677235 33.480587 36.362785 33.986553
Lsi07g01112 Lsi_Chr00 FPKM 18.225037 19.088314 27.737432 25.233772 22.949453 23.53492 22.701443 32.202919 34.235184 32.571899