Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01113 ATGGGCAGGATGGGAGGAAGGCAAAGGACTTACACCGCTAATTCCAGTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCGTCAAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCTTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGGCACATACATCGGGATGTCAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGTTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTCGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCATTCTCAAAATATCCTCCAATGAAGGTACTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTTGTGAAAGATCAAACCAAGAGACCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGTTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCCTTCTGTCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCGTCTCAGGATGAGCATGGAGTAGGGGCACGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAGCAAAAAGGGAAACTTTGAAAGTGATATGCTGAAACCTGGGTTGGAAGAAAAAACTGGATGGAATAGAAATGGAACTAGCAATGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGAAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGAACTCTCCTCTACGAAAGTCAGCTAGTGTTGGTGATTGGATATTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTGCAACATCAACGTGCCTACATCACTTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTGTTGAATAGCTTACATACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGCTCGGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGCTTCGAAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTACGAATTGACCGCTGAAAAGTTGAAATACATTCAAGTGAGTAATCCAATCTTTTACTTTCCCTACAATTGA 2118 42.87 MGRMGGRQRTYTANSSDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNVKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEESINSCSVKDAFCPQSSLRNFNSCNESSQDEHGVGARGQGLSQVECLSKKGNFESDMLKPGLEEKTGWNRNGTSNEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKNSPLRKSASVGDWIFDSKQSVSQPPKEACNINVPTSLLLPHLQNLFHQTSIQQDLIVNLLNSLHTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQVSNPIFYFPYN 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16576131 16587959 + Lsi07G011130.1 Lsi07g01113 667535

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01113 705 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 CDD STKc_OSR1_SPAK 16 279 - -
Lsi07g01113 705 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lsi07g01113 705 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 MobiDBLite consensus disorder prediction 639 659 - -
Lsi07g01113 705 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 697 - -
Lsi07g01113 705 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Lsi07g01113 705 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 MobiDBLite consensus disorder prediction 431 465 - -
Lsi07g01113 705 Coils Coil 343 363 - -
Lsi07g01113 705 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 482 506 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 643 657 - -
Lsi07g01113 705 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 697 - -
Lsi07g01113 705 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 419 518 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01113 - - - csv:101213683 1298.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02056 Lsi-Chr4:27651323 Lsi07g01113 Lsi-Chr7:16576131 4.28E-70 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi03g01252 Lsi-Chr3:23117627 9.39E-14 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi05g01693 Lsi-Chr5:24479118 6.81E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g230 . . . . . . . . Cmo06g00592 Cmo16g01271 . . . . . Cpe14g01014 . . . . . . . . . . . . . . . Cone8ag0549 Cone12ag0550 . . Lsi07g01113 . . Cme06g02394 . . . . . . . Bma12g00255 . . . Cma06g00589 Cma16g01228 Car06g00521 Car16g01156 Cpe08g00913 . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT1G53165 66.8 7.9e-199 690.6
Lsi04g01186 . 269 523 MAP Kinase Kinase Kinase Kinase AT1G53165 51.2 1.7e-60 231.1
Lsi04g02056 . 1 581 MAP Kinase Kinase Kinase Kinase AT3G15220 68.6 8.2e-204 707.2
Lsi04g01186 . 4 523 MAP Kinase Kinase Kinase Kinase AT1G69220 57.7 7.0e-138 488.4
Lsi04g01185 . 38 357 MAP Kinase Kinase Kinase Kinase AT1G69220 53.3 4.6e-81 299.7
Lsi04g02056 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 52.2 1.3e-67 255.0
Lsi02g01568 . 1 666 MAP Kinase Kinase Kinase Kinase AT5G14720 64.6 1.4e-245 845.9
Lsi05g01693 CCT 25 380 MAP Kinase Kinase Kinase Kinase AT5G14720 50.4 9.5e-96 348.2
Lsi07g01113 . 7 702 MAP Kinase Kinase Kinase Kinase AT4G24100 63.8 1.0e-236 816.6
Lsi07g01113 . 11 695 MAP Kinase Kinase Kinase Kinase AT4G10730 66.9 6.4e-249 857.1
Lsi03g01252 . 4 367 MAP Kinase Kinase Kinase Kinase AT1G70430 62.0 2.1e-131 466.5
Lsi07g01113 . 5 369 MAP Kinase Kinase Kinase Kinase AT1G70430 56.5 2.3e-117 419.9
Lsi03g01252 . 1 584 MAP Kinase Kinase Kinase Kinase AT1G79640 58.2 1.6e-201 699.5
Lsi02g01568 . 6 585 MAP Kinase Kinase Kinase Kinase AT1G79640 50.3 5.5e-157 551.6
Lsi02g01568 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.9 5.7e-103 371.7
Lsi03g01252 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.9 5.8e-87 318.5
Lsi07g01113 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 3.9e-75 279.3
Lsi05g01693 CCT 32 499 MAP Kinase Kinase Kinase Kinase AT4G14480 59.7 4.8e-142 501.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83799 PF00069 Pkinase 3.60E-61 CL0016 Lsi PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01113 Lsi_Chr07 FPKM 24.35441 25.141615 18.591606 17.467119 22.325352 22.269264 23.095818 19.558992 17.582924 17.794123