Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01113 ATGGGCAGGATGGGAGGAAGGCAAAGGACTTACACCGCTAATTCCAGTGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCTACTGTTTTTAGAGCGATCTATACTCCGTCAAATGAAGTCGTCGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCAAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATGAAGACAGCGTACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTATCTTGAAAGAGACTCTTAAAGCTTTGGAGTACCTTCATCGCCAAGGGCACATACATCGGGATGTCAAGGCTGGAAATATACTACTTGATAGTAATGGGTCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGTTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCACCAGAGGTATTGCAACCAGGAACTGGATATAATTCCAAGGCTGATATTTGGTCCTTCGGTATTACAGCTTTGGAGTTGGCTCATGGTCATGCACCATTCTCAAAATATCCTCCAATGAAGGTACTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGAGATAAACGGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTTGTGAAAGATCAAACCAAGAGACCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGTTAAGCCTCCAGAGGTTTCTTTGAAGAAACTATTTGCTAACTTGCCTCCTCTTTCACATCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGCAGAGATGAAGGAAGAGGAGGAGAGTATAAATTCTTGTAGTGTTAAGGATGCCTTCTGTCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCGTCTCAGGATGAGCATGGAGTAGGGGCACGTGGTCAGGGATTGTCACAAGTAGAGTGCTTGAGCAAAAAGGGAAACTTTGAAAGTGATATGCTGAAACCTGGGTTGGAAGAAAAAACTGGATGGAATAGAAATGGAACTAGCAATGAAGCAGAAGCATCTACCTCTGGCCAAGACATTGTACAAGGAAAGACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGCATTGTGCTCAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAATTCAACCATCTGCTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTAATGCTGCCAAACCGCGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTTTAGAGATTCAATGGATGACAAATCCAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGAACTCTCCTCTACGAAAGTCAGCTAGTGTTGGTGATTGGATATTCGATTCCAAGCAGTCTGTCAGCCAACCCCCTAAGGAGGCTTGCAACATCAACGTGCCTACATCACTTCTTTTGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAACTTGTTGAATAGCTTACATACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGCTCGGAGAATAATGGAAGTGCTGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGCTTCGAAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACTTACGAATTGACCGCTGAAAAGTTGAAATACATTCAAGTGAGTAATCCAATCTTTTACTTTCCCTACAATTGA 2118 42.87 MGRMGGRQRTYTANSSDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLMKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGSVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNVKPPEVSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMAEMKEEEESINSCSVKDAFCPQSSLRNFNSCNESSQDEHGVGARGQGLSQVECLSKKGNFESDMLKPGLEEKTGWNRNGTSNEAEASTSGQDIVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSEIQPSAEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKNSPLRKSASVGDWIFDSKQSVSQPPKEACNINVPTSLLLPHLQNLFHQTSIQQDLIVNLLNSLHTADVVDATQNGKLPPLPRSSENNGSAETAAVERERLLLRKVSELQARMTHLTYELTAEKLKYIQVSNPIFYFPYN 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16576131 16587959 + Lsi07G011130.1 Lsi07g01113 667535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01113 705 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 CDD STKc_OSR1_SPAK 16 279 - -
Lsi07g01113 705 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Lsi07g01113 705 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 MobiDBLite consensus disorder prediction 639 659 - -
Lsi07g01113 705 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 697 - -
Lsi07g01113 705 SUPERFAMILY Protein kinase-like (PK-like) 16 334 IPR011009 -
Lsi07g01113 705 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi07g01113 705 MobiDBLite consensus disorder prediction 431 465 - -
Lsi07g01113 705 Coils Coil 343 363 - -
Lsi07g01113 705 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 482 506 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 643 657 - -
Lsi07g01113 705 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 697 - -
Lsi07g01113 705 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Lsi07g01113 705 MobiDBLite consensus disorder prediction 419 518 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g02056 Lsi-Chr4:27651323 Lsi07g01113 Lsi-Chr7:16576131 4.28E-70 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi03g01252 Lsi-Chr3:23117627 9.39E-14 dispersed
Lsi07g01113 Lsi-Chr7:16576131 Lsi05g01693 Lsi-Chr5:24479118 6.81E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83799 PF00069 Pkinase 3.60E-61 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01113 - - csv:101213683 1298.88