Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01117 ATGGCGATTCTTAAGAGCTTTAGATTTGGGTTTGTTCTACAACTTGTGATGTTATTGCAGATCCATAGTGTAATCTGCTATCAGTACAAAGTTGGAGATTTGGATGCTTGGGGTCTTCCCGCTTCAGAAAACTCACAGATCTACATGTATTGGTCTAAATATCACTCTCTCAAGATTGGTGATTCTCTCATGTTCTTGTACCCACCAAGCGAAGATTCAGTGATTCAAGTTACAAAAGAATCTTACAACAGCTGCAATCTCAAGGATCCAATCTTGTACATGAAAGATGGCAACTCTCTTTTCAACATTACTGATTATGGGGATTTGTTCTTCACAAGTGGAGTTGCAGGTCATTGTGAGAAGAATCAGAAGCTTCATATTTCTGTTCTTTCTGGAAATGGTTCTTCTGCTAGTGCTCCCTCTTCTGATGGTGTACTTCCTGAGATCTCTCCTTCTTACCCTACAGTTTTTGGTGGAATCCCAGCAGCTCCAAGTGCCAATTCCAGTTCTTCCTCTTCCTCCTTGCCTACAAAAAGCATTTTTCTTCCTCCTGCTTTCATTGCTGCAGCTTTTGCTGGACTACTAGTGATTTTGATTGCATGA 603 40.8 MAILKSFRFGFVLQLVMLLQIHSVICYQYKVGDLDAWGLPASENSQIYMYWSKYHSLKIGDSLMFLYPPSEDSVIQVTKESYNSCNLKDPILYMKDGNSLFNITDYGDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGVLPEISPSYPTVFGGIPAAPSANSSSSSSSLPTKSIFLPPAFIAAAFAGLLVILIA 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16596660 16597628 + Lsi07G011170.1 Lsi07g01117 667539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01117 200 Pfam Plastocyanin-like domain 46 122 IPR003245 GO:0009055
Lsi07g01117 200 PANTHER MAVICYANIN 9 191 - -
Lsi07g01117 200 SUPERFAMILY Cupredoxins 26 130 IPR008972 -
Lsi07g01117 200 CDD OsENODL1_like 27 130 IPR041846 -
Lsi07g01117 200 Gene3D - 27 142 IPR008972 -
Lsi07g01117 200 ProSiteProfiles Phytocyanin domain profile. 27 131 IPR003245 GO:0009055
Lsi07g01117 200 PANTHER BLUE COPPER PROTEIN 9 191 IPR039391 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01117 - - - csv:101212968 312.768
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00698 Lsi-Chr7:7521762 Lsi07g01117 Lsi-Chr7:16596660 6.11E-20 dispersed
Lsi07g01117 Lsi-Chr7:16596660 Lsi08g01251 Lsi-Chr8:20976998 1.20E-20 dispersed
Lsi07g01117 Lsi-Chr7:16596660 Lsi04g02065 Lsi-Chr4:27778890 1.20E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014226 0 0 1 1 0 1 1 1 1 1 0 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01117 Lsi_Chr07 FPKM 5.376266 7.608883 18.460859 19.737909 54.05555 44.913982 62.910461 17.43749 17.921944 20.674505