Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01118 ATGGAAACCCAATCAGAAACCACTGAAGAAATCATGGCGAGCATCAAAGACAAACGTCAGGAACTCGAAGCTCGCATTTTGGCTCAGCATTCAAGCCAGTTGGAGCTCCTCTCTTCTCTTGAATCTCTTGTTCCTGATATTGTCTCTTCTCTCGACCTCTCTCTACAGGTCGTATCCTCCTTCAATGACCGCCCCTTTACTCCTACACCCATTCTCCCTGAACCCAAAAACAAACCCTCTAAATACCCTTTGTTCACTACTAACTCTGTGCCCCACAAATCCCGCCCTAATCTTCTTTCGTCAGGAGAAGCGAAGCCCGCGATTCAGAAGAATCAAAATGCGAAGGCGTACCCGGAATCGAATTCCGATCGTAAGCGAGCTCGCCAGCCGGATGGGGGGAAGTTTTCGATGGACGATAGTGGAAGCCCTTTGTCAGTTGTGCGGTCGATGGTGGCAGTTTGTTTACTTGAACGGGTGCCTTTTACAACGATTGATTCTTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACAGCGGCGGAGAAGGCGGCGCTGCGGGAAGTAGGCGGTGATTCCGGTGCGATATTGGCGGTGGAGATGGCTTTGAGGTCGATGGCGGAGGATAGCGGTGGGGTTGAGTTGGAGGAGTTTGTGGTGAGTGGGAAGTCTCGAGTGATGGTGTTGGGTATTGATCGAACTCGGCTTATGAAGGAACTGCCTGAGAGTGCAAATTTTCAGTTGCAGGAATCGAGTTTGGGAGAGGGTAATTCGAGCCACAATCAGAATCAGCAAGTGGTGAGTGGTGGTGGTGTGGATGTTAATGGCGGAGTTTTTGGGATGGGAGGGCCGTTGCCAAGGCCGTTACCGGAGATGTGGATGGGGCCTGGAGACCCCAACATGCAGGGGCTGACACCCATGTTTCCGGCAAGTGGACCAGCAGGTGCAATGGCGGGGGCAAGGGGTGCGCCTAGGATGATGGGGATGATGGGGATGCCTCGAGGGATGGGACTCCCACCATTGCACAGGCCATTGATGGGGCCAAATGTGTCCATGGCTGGCCCCAATTCAATGCCGCAGAAGCCTAGAACTGAAGAGGATGACATGAAGGATCTCGAGGCCTTGTTGAGCAAGAAGTCCTTCAGAGAATTGCAAAAGTCAAAGACTGGTGAGGAGCTTTTGGACCTCATTCACCGGCCAACTGCCAGGGAAACTGCTGTGGCTGCAAAGTTTAAAACTAAAGGTGGTTCACAACTGAAGGAATACTGCTCGTCCTTGACAAAAGAGGACTGCCGGCGTCAATCTGGCTCTTTTATCGCATGTGAGAAGGTTCATTTTCGGCGTATAATTGCTCCACATACCGACATCAATCTGGGTGACTGCTCTTTTCTCGATACTTGTCGTCACATGAAGACATGCAAGTATGTACATTACGAGCTTGATCCAATTCAAGATGTGCCACCTATGCTGATGGGAGCTGGATCTATTCCTCCCAAATCGCTAAAGCCTCAGCGAGCTGAATACTGTTCGGAAGTGGAACTTGGTGAACCGCAATGGATTAACTGCGATATTCGTAATTTTAGAATGGATATTTTGGGGCAATTTGGAGTTATTATGGCTGATCCCCCGTGGGATATCCATATGGAATTGCCTTATGGGACAATGGCTGATGATGAAATGCGCAACCTTAACGTTCCTGCACTACAGACTGATGGTTTGATTTTTCTTTGGGTCACTGGACGTGCAATGGAACTTGGAAGAGAATGTTTAGAACTATGGGGATACAAGCGTGTTGAGGAGCTTATATGGGTTAAAACAAATCAACTTCAAAGAATTATTAGAACAGGGCGGACAGGCCATTGGCTCAATCATAGTAAGGAGCATTGCCTTGTTGGAATAAAGGGAAACCCAGAAGTTAACAGGAATATTGATACAGATGTTGTTGTTGCCGAGGTTCGAGAAACAAGCCGTAAACCAGATGAGATGTACCCTTTGCTTGAAAGGATAAGTCCAAGAACAAGAAAGCTAGAATTGTTTGCTCGGATGCACAACACGCATGCAGGGTGGATATCTCTTGGTAATCAATTGAGTGGAGTGCGATTGGTTGATGAAGGGCTAAGAGCAAGGTTCAAGGCTGCATATCCAAATGTGGAGGTCCAACCGGCGTCCCCTCCAAGAGCATCAATGGAAATTGATTCTGGGGCTGCCCAGATGAGGAGTCCCTTTGCAGTATCAGAATCAAAGCCGCCATATGGAGGAGACCCTACGATTCCTGAGGTTCCATATGCAGCAGCAGCTACTCCAGATAAAGCAATTGCAGTAGGAGTTGACACGGTTAACTGA 2346 48.81 METQSETTEEIMASIKDKRQELEARILAQHSSQLELLSSLESLVPDIVSSLDLSLQVVSSFNDRPFTPTPILPEPKNKPSKYPLFTTNSVPHKSRPNLLSSGEAKPAIQKNQNAKAYPESNSDRKRARQPDGGKFSMDDSGSPLSVVRSMVAVCLLERVPFTTIDSSTVLRKLENDQKATAAEKAALREVGGDSGAILAVEMALRSMAEDSGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESANFQLQESSLGEGNSSHNQNQQVVSGGGVDVNGGVFGMGGPLPRPLPEMWMGPGDPNMQGLTPMFPASGPAGAMAGARGAPRMMGMMGMPRGMGLPPLHRPLMGPNVSMAGPNSMPQKPRTEEDDMKDLEALLSKKSFRELQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSSLTKEDCRRQSGSFIACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPIQDVPPMLMGAGSIPPKSLKPQRAEYCSEVELGEPQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRECLELWGYKRVEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLSGVRLVDEGLRARFKAAYPNVEVQPASPPRASMEIDSGAAQMRSPFAVSESKPPYGGDPTIPEVPYAAAATPDKAIAVGVDTVN 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16598922 16605054 - Lsi07G011180.1 Lsi07g01118 667540

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01118 781 MobiDBLite consensus disorder prediction 119 133 - -
Lsi07g01118 781 Pfam MT-A70 536 696 IPR007757 -
Lsi07g01118 781 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 1 729 - -
Lsi07g01118 781 MobiDBLite consensus disorder prediction 66 140 - -
Lsi07g01118 781 ProSiteProfiles MT-A70-like family profile. 498 716 IPR007757 -
Lsi07g01118 781 Coils Coil 170 190 - -
Lsi07g01118 781 Coils Coil 5 25 - -
Lsi07g01118 781 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 1 729 - -
Lsi07g01118 781 MobiDBLite consensus disorder prediction 104 118 - -
Lsi07g01118 781 MobiDBLite consensus disorder prediction 81 96 - -
Lsi07g01118 781 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 515 676 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01118 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1410.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g00114 Lsi-Chr7:1279429 Lsi07g01118 Lsi-Chr7:16598922 2.43E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01118 Lsi_Chr07 FPKM 25.268448 29.124914 37.594387 38.572647 14.33353 14.223072 14.448483 103.003517 98.914314 99.267059