Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01120 ATGCTCAAGTACCTCGTCGGTTCCGCCGGAGCAAGCGGCTATGGCTCCAAATCCACCGCCGAAGAAGTCACTCAATCTTGTACTCATCTGAACTCCATCACCGCCATAGTCACAGGAGCGACGTCGGGAATCGGAGAGGAGACGGCGAGAGTCTTAGCCAAGCGCGGCGCAAGGATCATCATTCCGGCTCGCAACCTAAAAGCCGCCGAGGAAGCGAAGGCGAGAATCGTATCGGAATCGGATTGTTTCGATCATTCACGAATTACGGTGATGGTTCTCGATCTTAGCTCTCTGAATTCCGTCATGAACTTCGTCTCCGAATTCGAGTCCTTAAATTTGCCTCTTAATCTCCTCATGCAAGAACATTACGTACAGAACAAATTTGTTTCATCTCCTTTAATCACGAGGACTTTCACCATTACTGATCGAATCGATCAAATCGATAATGCAGGTCATTTTTTCTTGACGAAACTTCTGTTGAACAAGATGATAGAAACGGCTAAATCGACGGGAATCCAAGGCCGAATAGTGAATGTAACGTCCAACATCCACAGCTGGTTTTCCGGCGACTTATTCGAATATCTCAGCCAGCTAAGCCGGAACAACAACAACAACAGAGAGTACGATGGGACACGCGCTTACGCGTTCTCCAAGCTCTCAAATGTCTTGCACACCGTACAACTAGCTCACAGACTTCAGGAAATGAAGGCAAATGTTACTGTAAACTGTGTTCATCCGGGCGTTGTGAGAACTAATTTGAACAGAGATCGTGAAGGCTTCATTACAGATTTGATTTTCTACATGGCGAAGAAATCAAAGTTGTTGAAGACAATTCCTCAAGGCGCAGCAACAAGTTGTTACGTAGCGACGAATCGGAACCTGGAACATGTGAATGGAAAATATTTTGCCGATTGCAATGAACAAGGAAGCTGTGAATCCAATACAAAATCAGCGCACTTGGCCGAACGCCTGTGGTCCGCCTCTGAAACCATGGTCTCCACTTTAACTGGTACGCCTCAACCCTAA 1026 46.59 MLKYLVGSAGASGYGSKSTAEEVTQSCTHLNSITAIVTGATSGIGEETARVLAKRGARIIIPARNLKAAEEAKARIVSESDCFDHSRITVMVLDLSSLNSVMNFVSEFESLNLPLNLLMQEHYVQNKFVSSPLITRTFTITDRIDQIDNAGHFFLTKLLLNKMIETAKSTGIQGRIVNVTSNIHSWFSGDLFEYLSQLSRNNNNNREYDGTRAYAFSKLSNVLHTVQLAHRLQEMKANVTVNCVHPGVVRTNLNRDREGFITDLIFYMAKKSKLLKTIPQGAATSCYVATNRNLEHVNGKYFADCNEQGSCESNTKSAHLAERLWSASETMVSTLTGTPQP 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16636937 16638595 + Lsi07G011200.1 Lsi07g01120 667542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01120 341 Gene3D - 19 335 - -
Lsi07g01120 341 PANTHER RETINOL DEHYDROGENASE 2 335 - -
Lsi07g01120 341 PANTHER OS06G0129100 PROTEIN 2 335 - -
Lsi07g01120 341 Pfam short chain dehydrogenase 34 182 IPR002347 -
Lsi07g01120 341 PRINTS Glucose/ribitol dehydrogenase family signature 34 51 IPR002347 -
Lsi07g01120 341 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Lsi07g01120 341 PRINTS Glucose/ribitol dehydrogenase family signature 168 184 IPR002347 -
Lsi07g01120 341 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 304 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01120 - - K11153 csv:101209877 527.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01120 Lsi-Chr7:16636937 Lsi09g00172 Lsi-Chr9:1794538 1.42E-128 dispersed
Lsi07g01120 Lsi-Chr7:16636937 Lsi06g01573 Lsi-Chr6:26144841 7.64E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g203 . . . Bda08g00756 . Bpe07g00255 . . . Cmo16g01268 Cma02g00912 . Car02g00663 . . Cpe14g01011 . . . . . . . . Cla07g00789 Cam07g0852 Cec07g0905 Cco07g0887 Clacu07g0827 Cmu07g0830 Cre07g1188 . . . . Lsi07g01120 . . Cme07g01644 . . . . . . . Bma12g00444 . Cmo02g00919 . . Cma16g01224 . Car16g01152 Cpe08g00909 . . . . . . . . . . . . . . . . . Chy07g01228 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002525 1 2 2 1 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 1 2 2 2 2 1 3 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01120 Lsi_Chr07 FPKM 3.144469 3.312777 4.613129 4.800182 3.467206 4.304836 4.996974 7.382517 7.817916 8.762506