Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01137 ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACTTAAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTATCAGCAAGGAATGCTGGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATCATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGAACGTATTGGCGACCCTGTATCAGCAACAAGATCATCGGTAACAGGTGCATTTAGCGGAAACCTCCTATCCACTGTGGGGGGCCTGGGTGCTTCACCTGGCAGTGGAATAACTGGTAAGGTGAATGTATCTAGTGCGTCTTTTGAACAGCCTAAAGTGAACCAATCACATGTACCACATGTGGGATCTTATTCTAACCCTACTGAGTCTGGAAGATACTCTGCATCAATCACGCCTCCTTCCTACTCTAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGTGGATCAGATGTTCCCCGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAATATATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCTGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGGCACTACAATAATCCTCGTGGTGATGGGAAAGTATTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACGTCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATCAATCCTGCAACTTCTCTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTTCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGGTTTCCCTGAGGCTCGTACACTGAGAGAGTGGTTTGAGAAGGGAGGGAGGAGTACTCCGTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCGGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCTGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCAGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAAAGCACCATGCATAATCTCGGATTTCGTGACCCTGCATCTGGGAATATTGGTGGTGGACAGTTTGTGTCACCCATTCGAAATAGCACAAATGTCGGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCGTCCACACAGCTTAACTCGAACACATACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCGACGAACTGCCCGAGTATCATGAGCGGTCCTGCACTATCTGTTGGAGGGGGGATGTATTCAAATCGAACTTCTGGCCCCTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCGGCTTCACGGCTAGGTGA 2583 44.75 MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSSVTGAFSGNLLSTVGGLGASPGSGITGKVNVSSASFEQPKVNQSHVPHVGSYSNPTESGRYSASITPPSYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDVPRPPLNAYGRPQPIYQQPPSMYSNRGPVAKNEAAPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPGFPEARTLREWFEKGGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESIDFSTESRFLLDLMDKLRAENTSSVTPKAESTMHNLGFRDPASGNIGGGQFVSPIRNSTNVGREYGTPNQGVQYGNQYSSSRPSPSTQLNSNTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRTSGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSGFTAR 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16797318 16801650 + Lsi07G011370.1 Lsi07g01137 667559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01137 860 Gene3D - 8 123 IPR012340 -
Lsi07g01137 860 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Lsi07g01137 860 CDD RPA1_DBD_B 399 506 - -
Lsi07g01137 860 SMART c2hcfinal6 784 800 IPR001878 GO:0003676|GO:0008270
Lsi07g01137 860 SMART c2hcfinal6 828 844 IPR001878 GO:0003676|GO:0008270
Lsi07g01137 860 Gene3D - 516 707 IPR012340 -
Lsi07g01137 860 MobiDBLite consensus disorder prediction 757 779 - -
Lsi07g01137 860 CDD RPA1N 13 109 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lsi07g01137 860 MobiDBLite consensus disorder prediction 162 212 - -
Lsi07g01137 860 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lsi07g01137 860 SUPERFAMILY Nucleic acid-binding proteins 383 510 IPR012340 -
Lsi07g01137 860 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 251 706 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi07g01137 860 CDD RPA1_DBD_A 267 370 - -
Lsi07g01137 860 ProSiteProfiles Zinc finger CCHC-type profile. 785 800 IPR001878 GO:0003676|GO:0008270
Lsi07g01137 860 Pfam Replication protein A OB domain 388 491 IPR031657 -
Lsi07g01137 860 SUPERFAMILY Retrovirus zinc finger-like domains 810 848 IPR036875 GO:0003676|GO:0008270
Lsi07g01137 860 Pfam Replication factor-A C terminal domain 549 700 IPR013955 -
Lsi07g01137 860 ProSiteProfiles Zinc finger CCHC-type profile. 829 843 IPR001878 GO:0003676|GO:0008270
Lsi07g01137 860 SUPERFAMILY Nucleic acid-binding proteins 530 707 IPR012340 -
Lsi07g01137 860 PANTHER REPLICATION FACTOR A 1, RFA1 6 742 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lsi07g01137 860 SUPERFAMILY Nucleic acid-binding proteins 264 377 IPR012340 -
Lsi07g01137 860 Pfam OB-fold nucleic acid binding domain 278 363 IPR004365 GO:0003676
Lsi07g01137 860 Pfam Zinc knuckle 828 843 IPR001878 GO:0003676|GO:0008270
Lsi07g01137 860 PANTHER REPLICATION PROTEIN A SUBUNIT 6 742 - -
Lsi07g01137 860 Gene3D - 377 515 IPR012340 -
Lsi07g01137 860 Gene3D - 264 373 IPR012340 -
Lsi07g01137 860 CDD RPA1_DBD_C 533 706 IPR013955 -
Lsi07g01137 860 Gene3D - 780 847 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01137 Lsi-Chr7:16797318 Lsi11g00167 Lsi-Chr11:1774806 2.39E-20 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01137 K07466 - csv:101211358 1610.12