Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi07g01137 | ATGGCAGCGTCAATGGCGCCGTCTAAGCTGACGGAAGGAGCAGTGATGGTGATATGCAAGAGGGAATCGTCGGCAGAGACGTTCCAGCCGATTCTACAAGTAATTGACTTAAAATTGGTTAACACTTCGCAACAATCGGGCAGCGAGAGGTTCAGATTGTTGGTTTCTGATGGAACCCATTATCAGCAAGGAATGCTGGGCACTCAGCTCAATGAATTGGTTAAGTCCGGGAAGTTACAGATAGGTTCCATCGTTCGACTGCGGCAGTATGTTTGTAACCCCGTTCAAGAACGCCTGATTATCATTGTCATTGAGTTGGATGTGATAGAGGAAATGTGTGAACGTATTGGCGACCCTGTATCAGCAACAAGATCATCGGTAACAGGTGCATTTAGCGGAAACCTCCTATCCACTGTGGGGGGCCTGGGTGCTTCACCTGGCAGTGGAATAACTGGTAAGGTGAATGTATCTAGTGCGTCTTTTGAACAGCCTAAAGTGAACCAATCACATGTACCACATGTGGGATCTTATTCTAACCCTACTGAGTCTGGAAGATACTCTGCATCAATCACGCCTCCTTCCTACTCTAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTCCTTTAACTGGATCATATGGTGATCAGAAGATGGCATATCACAACAGTGGATCAGATGTTCCCCGGCCACCTCTAAATGCTTATGGCCGTCCTCAGCCAATATATCAGCAGCCACCTTCAATGTACAGTAACAGAGGACCTGTAGCAAAAAATGAAGCTGCCCCAAGGATAATGCCTATTACTGCTCTCAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGGCACTACAATAATCCTCGTGGTGATGGGAAAGTATTTTCATTTGATTTACTTGATGCATACCGTGGAGAAATACGAGTAACATGCTTCAATACAGTAGCTGATCAGTTTTACAACCAGATTGAATCTGGTAAAGTCTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTATAACCATCTAAAAAATGACTATGAAATATTTCTTGAAAACACGTCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAGCAGTTTCATTTCCATCAGATTAGTGAGATCGAGGGCATGGACAGCAACAGTGTTGTAGATGTAATTGGTGTTGTTTCTTCCATCAATCCTGCAACTTCTCTAATGAGAAAAAATGGCACTGAGACTCAGAAGAGATCCCTTCAGTTGAAAGATATGTCTGGTCGAAGTGTTGAATTGACTCTTTGGGGAAACTTCTGTCAAGCGGAAGGGCAAAGATTGCAAAATATGTGTGACTCGGGGTTGTTTCCAGTTTTGGCTGTGAAATCTGGTAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGAACCATTTCAACAAGTCAGCTTTTTGTAGAGCCAGGTTTCCCTGAGGCTCGTACACTGAGAGAGTGGTTTGAGAAGGGAGGGAGGAGTACTCCGTCTGTCTCTATATCCAGGGAAGTTGCTAGTGTGGGTAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCGGAGAAGCCAGATTGGATCACGGTTAGTGCAACTGTTTCATTTATTAAGGTTGACAATTTCTGTTACACAGCATGTCCTATCATGATTGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACAGGTGTGATCAGTCTGTTGACGAATGTGACTACAGGTACATACTGCAGCTGCAAATACAGGATCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAGATCATGGGCATACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCTGAAATCATCCGCAAGGTTCTTTTTACAAAATTTATAATGAAGTTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGATCAACAGTGGTGAAAGCAGAAAGCATTGATTTTTCGACCGAGTCCAGGTTTCTTCTAGATTTGATGGATAAACTCAGGGCAGAGAACACTAGTTCTGTTACCCCAAAGGCAGAAAGCACCATGCATAATCTCGGATTTCGTGACCCTGCATCTGGGAATATTGGTGGTGGACAGTTTGTGTCACCCATTCGAAATAGCACAAATGTCGGCAGAGAATATGGTACACCCAACCAAGGTGTTCAGTATGGGAACCAGTACAGCAGCTCTAGGCCTTCTCCGTCCACACAGCTTAACTCGAACACATACTGCAACAGCTGTGGGGGCTCTGGCCACAGCTCGACGAACTGCCCGAGTATCATGAGCGGTCCTGCACTATCTGTTGGAGGGGGGATGTATTCAAATCGAACTTCTGGCCCCTCTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAAACTGGGCATTGGGCTAGGGATTGCCCTGGTTTGGCCTCTGTCCCTCCAGCTTATGGCAACAGCGGCTTCACGGCTAGGTGA | 2583 | 44.75 | MAASMAPSKLTEGAVMVICKRESSAETFQPILQVIDLKLVNTSQQSGSERFRLLVSDGTHYQQGMLGTQLNELVKSGKLQIGSIVRLRQYVCNPVQERLIIIVIELDVIEEMCERIGDPVSATRSSVTGAFSGNLLSTVGGLGASPGSGITGKVNVSSASFEQPKVNQSHVPHVGSYSNPTESGRYSASITPPSYSKTDPGTRFNGSSPLTGSYGDQKMAYHNSGSDVPRPPLNAYGRPQPIYQQPPSMYSNRGPVAKNEAAPRIMPITALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAYRGEIRVTCFNTVADQFYNQIESGKVYFISKGSLKPAQKNYNHLKNDYEIFLENTSTIQPCFEDDQSIPQQQFHFHQISEIEGMDSNSVVDVIGVVSSINPATSLMRKNGTETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSGRVSDFNGKAVGTISTSQLFVEPGFPEARTLREWFEKGGRSTPSVSISREVASVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESIDFSTESRFLLDLMDKLRAENTSSVTPKAESTMHNLGFRDPASGNIGGGQFVSPIRNSTNVGREYGTPNQGVQYGNQYSSSRPSPSTQLNSNTYCNSCGGSGHSSTNCPSIMSGPALSVGGGMYSNRTSGPSGGASGECFKCHQTGHWARDCPGLASVPPAYGNSGFTAR | 860 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16797318 | 16801650 | + | Lsi07G011370.1 | Lsi07g01137 | 667559 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi07g01137 | 860 | Gene3D | - | 8 | 123 | IPR012340 | - | |
Lsi07g01137 | 860 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
Lsi07g01137 | 860 | CDD | RPA1_DBD_B | 399 | 506 | - | - | |
Lsi07g01137 | 860 | SMART | c2hcfinal6 | 784 | 800 | IPR001878 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | SMART | c2hcfinal6 | 828 | 844 | IPR001878 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | Gene3D | - | 516 | 707 | IPR012340 | - | |
Lsi07g01137 | 860 | MobiDBLite | consensus disorder prediction | 757 | 779 | - | - | |
Lsi07g01137 | 860 | CDD | RPA1N | 13 | 109 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Lsi07g01137 | 860 | MobiDBLite | consensus disorder prediction | 162 | 212 | - | - | |
Lsi07g01137 | 860 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Lsi07g01137 | 860 | SUPERFAMILY | Nucleic acid-binding proteins | 383 | 510 | IPR012340 | - | |
Lsi07g01137 | 860 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 251 | 706 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Lsi07g01137 | 860 | CDD | RPA1_DBD_A | 267 | 370 | - | - | |
Lsi07g01137 | 860 | ProSiteProfiles | Zinc finger CCHC-type profile. | 785 | 800 | IPR001878 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | Pfam | Replication protein A OB domain | 388 | 491 | IPR031657 | - | |
Lsi07g01137 | 860 | SUPERFAMILY | Retrovirus zinc finger-like domains | 810 | 848 | IPR036875 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | Pfam | Replication factor-A C terminal domain | 549 | 700 | IPR013955 | - | |
Lsi07g01137 | 860 | ProSiteProfiles | Zinc finger CCHC-type profile. | 829 | 843 | IPR001878 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | SUPERFAMILY | Nucleic acid-binding proteins | 530 | 707 | IPR012340 | - | |
Lsi07g01137 | 860 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 6 | 742 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Lsi07g01137 | 860 | SUPERFAMILY | Nucleic acid-binding proteins | 264 | 377 | IPR012340 | - | |
Lsi07g01137 | 860 | Pfam | OB-fold nucleic acid binding domain | 278 | 363 | IPR004365 | GO:0003676 | |
Lsi07g01137 | 860 | Pfam | Zinc knuckle | 828 | 843 | IPR001878 | GO:0003676|GO:0008270 | |
Lsi07g01137 | 860 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 6 | 742 | - | - | |
Lsi07g01137 | 860 | Gene3D | - | 377 | 515 | IPR012340 | - | |
Lsi07g01137 | 860 | Gene3D | - | 264 | 373 | IPR012340 | - | |
Lsi07g01137 | 860 | CDD | RPA1_DBD_C | 533 | 706 | IPR013955 | - | |
Lsi07g01137 | 860 | Gene3D | - | 780 | 847 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi07g01137 | Lsi-Chr7:16797318 | Lsi11g00167 | Lsi-Chr11:1774806 | 2.39E-20 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi07g01137 | K07466 | - | csv:101211358 | 1610.12 |