Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01140 ATGTTTACATGCATAGCATGTACGAAACAGACAGACGACGGAGGTGAGGATGGGGCTGCGCGTGGGAGTGGCACGCCTAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATTAAGGACATGGCGTTGAAATTTTCGGGTGCTTATAGGCAGTGCAAACCCTGCACAGGCTCCAGTAGCTATAAGAAAGGACAGCGACCTTACCCAGATTTTGACACAGCTTCAGAAGGGGTTCCATACCCTTACATAGGAGGGGCAAGTGCGAGTTCAACCCCTGCTTGGGACTTCCCTCCTGTTAATCGCCACCCACATACCAAATCTGACTCTCGATTTAAAGGGACTTTCAGGGGAGATCAGACTCCTGGAGGCGATTCCACGATATCAGCATGTGATGTGGTGCTTGAGGATGAGGATGAGCCGAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGAGGCAATGATTTAAAACGAATTCGTTTCAATCGAGAAATGTTTAACAAATGGCAAGCTCAGCGATGGTGGGGGGAGAACTATGATAGAATAACGGAGCTTTATAATGTCCAGAGATTCAACCAGCAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAAGATGGGAAGGGATAGCCCGATGACTTCCGCGAACAAAGATTGGACGCCGAGAAACTATAAACCTTCTGGAAGTAAAGGATTTCCATCTGACCAGCATTTTGATCATGGAAGCAGCCACCCCTATGCAGGCTCAAGTGCTTACCCAGCAGGCAGCGCCAAAGGTGACATGTCGTCTATGGAAGCATCACGCACAACTACCTCTTCTAGAGATGAACCTTCGATTTCCATTAGCAACGCAAGCGACATCGAGGCAGAATGGGTCGAGGAAGATGAACCGGGGGTCTATATAACTATCAGGCAGCTTGTTGATGGCACTAGAGAGCTTCGTCGTGTTAGATTCAGCCGCGAAAGGTTCGGGGAAATGAACGCGAAGCAATGGTGGGAACATAACAGGGAGAGGATCCAAGCTCAATACCTATAA 1086 48.99 MFTCIACTKQTDDGGEDGAARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHTKSDSRFKGTFRGDQTPGGDSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSKMGRDSPMTSANKDWTPRNYKPSGSKGFPSDQHFDHGSSHPYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSISISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEMNAKQWWEHNRERIQAQYL 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16845671 16852353 - Lsi07G011400.1 Lsi07g01140 667562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01140 361 MobiDBLite consensus disorder prediction 203 299 - -
Lsi07g01140 361 Pfam Transcription factor BRX N-terminal domain 23 56 IPR027988 -
Lsi07g01140 361 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 361 IPR044532 -
Lsi07g01140 361 MobiDBLite consensus disorder prediction 11 30 - -
Lsi07g01140 361 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 361 - -
Lsi07g01140 361 Pfam Transcription factor regulating root and shoot growth via Pin3 305 360 IPR013591 -
Lsi07g01140 361 Pfam Transcription factor regulating root and shoot growth via Pin3 142 196 IPR013591 -
Lsi07g01140 361 ProSiteProfiles BRX domain profile. 142 197 IPR013591 -
Lsi07g01140 361 ProSiteProfiles BRX domain profile. 306 361 IPR013591 -
Lsi07g01140 361 MobiDBLite consensus disorder prediction 102 127 - -
Lsi07g01140 361 MobiDBLite consensus disorder prediction 223 247 - -
Lsi07g01140 361 MobiDBLite consensus disorder prediction 279 299 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g02911 Lsi-Chr2:35320628 Lsi07g01140 Lsi-Chr7:16845671 5.86E-62 dispersed
Lsi07g01140 Lsi-Chr7:16845671 Lsi08g00535 Lsi-Chr8:13316285 7.71E-15 dispersed
Lsi07g01140 Lsi-Chr7:16845671 Lsi11g00169 Lsi-Chr11:1783601 4.73E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01140 - - csv:101210860 728.013