Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01143 ATGTCGTCGAAGGTCGTGTATGAAGGTTGGATGGTGCGGTATGGCCGGCGGAAGATCGGCAGGTCCTTCATTCACATGCGGTATTTCGTGCTTGAATCTCGGTTGCTTGCGTATTATAAGAAGAAGCCCCAGGATAATCAAGTTCCAATTAAGACCATGCTAATAGATGGAAACTGTAGAGTGGAGGATCGTGGCTTGAAGACGCACCATGGACATATGGTTTATGTCTTGTCTGTTTACAACAAGAAAGAGAAGTACCATCGAATTACGATGGCGGCCTTCAATATCCAAGAAGCGTTACTGTGGAAGGAGAAAATAGAGCTTGTCATTGATCTGCACCAAGGCTCACAAGTTCCGAATGGGAACAAATTTGTATCTTTTGAATATAAATCGGGAATGGATAATGGGAGGACTGCTTCCTCCTCGGATCATGAAAGTCAGATCAGCGCACAGGAGGATGAGGATGATGCTCATCCAAATTTACTGCGAAGGACAACTATCGGAAATGGACCTCCAGAGTCAGTATTTGACTGGACGAGGGAAATAGGATCGGATTTTTCAAATCAAAATGCCAATAGTCAAGCTTTTTCACGGAAGCATTGGCGTCTAGTTCAGTGCCAAAATGGACTTCGCATATTTGAAGAGCTAGTGGAGGTTGACTACCTTCCAAGGAGCTATAGTAGGGCAATGAAAGCTGTTGGTGTAGTGGAGGCTACTTGTGAGGAAATCTTTGAACTTGTCATGAGCATGGATGGAACACGGTTTGAGTGGGACTGCAGTTTCCAGTATGGTAGCTTGGTTGAAGAGGTGGATGGACATACGGCAATACTCTACCATAGGCTACAGCTAGACTGGTTTCCAATGTTTGTATGGCCCCGTGACCTCTGCTATGTGCGCTATTGGCGTCGCAATGATGATGGAAATTATGTGGTATTATTTCGCTCAAGGGAGCATGAGAACTGTGGTCCACAACCAGGTGCCTCTTGCTTGTTTCCTGATTTTCTAAGGTGGAGGATTCAACATTTCACCTCTGAAACCTCGAAATGGGAAGCCAAGAACTCAGGGCTGCGCGAATGGTTTGCACAAACAGATGAAAGAAATGCTCCTCCAAGAATACCAGTTATGGTAAATATGGCTTCAGCTACAGTTTCATCACAAAAGAGCCTGAAAGTCCAGGGGTCCAGCGTTCATGCTAGCTCTTCTATCGACCAAATGAATGCTGCAAATAGAAATTCTGTGATGTTGGATGAATACTCTGACGAAGATGAAGAATATCAAATACCTGAGAGTGAACAAGAGGTGTACCCAAATGAGCAGGAGAATGATGTCAAGAGAGCAGCCTTGGAAGAAGAATCAACAGATCGAATTGATTTATCCAGTTTCTCGGGAAATATAAGGCATGATGATCGTGATGGTTCTCGAGATTGCTGGAGGATTTCTGATGGGAACAACTTCAGAGTTCGTAGTAAGACCTTTTGTTTCGACAAGACTAAGATTCCAGCTGGGAAGCATTTAATGGATCTGGTTGCTGTCGATTGGCTGAAGGACACAAAAAGAATGGACCACGTCGCCAGGCGACAAGGCTGTGCAGCTCAAGTCGCTTCAGAAAAAGGTCTTTTCTCTATCGTCATGAATGTGCAAGTACCTGGTTCGACGCACTACAGCATGATATTTTATTTTGTGACGAAGGAACTCATTCCTGGATCTCTTTTGCAACGTTTTGTTGATGGCGATGATGAATTTCGCAACAGTAGGTTAAAACTCATTCCATCAGTTCCCAAGGTCGATGTTGATATTGGCTCTTCGACGGTTGCTAATGGAGTTTTGGGACTTGTCATCGGTGTAATTACAACATTGGTGGTTGACATGGCTTTCCTTATACAGGCAAATACAACAGAAGAATTACCAGAGCGATTACTTGGAGCAGTAAGAGTGTCTCACATTCAGCTCTCCTCTGCCATACCTGCTAACTTGGACTCTTATCCATCTGATTGA 1995 44.26 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALLWKEKIELVIDLHQGSQVPNGNKFVSFEYKSGMDNGRTASSSDHESQISAQEDEDDAHPNLLRRTTIGNGPPESVFDWTREIGSDFSNQNANSQAFSRKHWRLVQCQNGLRIFEELVEVDYLPRSYSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGNYVVLFRSREHENCGPQPGASCLFPDFLRWRIQHFTSETSKWEAKNSGLREWFAQTDERNAPPRIPVMVNMASATVSSQKSLKVQGSSVHASSSIDQMNAANRNSVMLDEYSDEDEEYQIPESEQEVYPNEQENDVKRAALEEESTDRIDLSSFSGNIRHDDRDGSRDCWRISDGNNFRVRSKTFCFDKTKIPAGKHLMDLVAVDWLKDTKRMDHVARRQGCAAQVASEKGLFSIVMNVQVPGSTHYSMIFYFVTKELIPGSLLQRFVDGDDEFRNSRLKLIPSVPKVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLIQANTTEELPERLLGAVRVSHIQLSSAIPANLDSYPSD 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16895415 16907622 + Lsi07G011430.1 Lsi07g01143 667565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01143 664 ProSiteProfiles PH domain profile. 4 111 IPR001849 -
Lsi07g01143 664 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 354 594 IPR045096 -
Lsi07g01143 664 SUPERFAMILY PH domain-like 2 120 - -
Lsi07g01143 664 Gene3D - 1 119 IPR011993 -
Lsi07g01143 664 Pfam START domain 226 326 IPR002913 GO:0008289
Lsi07g01143 664 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2 595 660 - -
Lsi07g01143 664 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2 3 327 - -
Lsi07g01143 664 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 595 660 IPR045096 -
Lsi07g01143 664 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 3 327 IPR045096 -
Lsi07g01143 664 MobiDBLite consensus disorder prediction 147 161 - -
Lsi07g01143 664 CDD START 200 327 - -
Lsi07g01143 664 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2 354 594 - -
Lsi07g01143 664 SUPERFAMILY Bet v1-like 184 327 - -
Lsi07g01143 664 SMART START_1 181 389 IPR002913 GO:0008289
Lsi07g01143 664 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 595 648 IPR009769 -
Lsi07g01143 664 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 477 594 IPR009769 -
Lsi07g01143 664 SMART PH_update 5 113 IPR001849 -
Lsi07g01143 664 MobiDBLite consensus disorder prediction 135 172 - -
Lsi07g01143 664 Coils Coil 663 664 - -
Lsi07g01143 664 CDD PH 7 106 - -
Lsi07g01143 664 Gene3D - 163 328 IPR023393 -
Lsi07g01143 664 ProSiteProfiles START domain profile. 201 336 IPR002913 GO:0008289
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01143 - - - csv:101209463 1235.71
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi01g00638 Lsi07g01143 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01143 Lsi-Chr7:16895415 Lsi11g00379 Lsi-Chr11:3906638 2.74E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g803 . . . . . . . . Cmo06g00616 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01143 . . Cme06g02419 . . . . . . . . . . . Cma06g00610 . Car06g00543 . . . . . . . . . . . . . . . . . . . . .
Vvi4g1053 . . Bda04g00037 . . . Bma09g00093 . . . . Cma07g00460 . Car07g00406 Sed14g1163 Cpe19g00830 . Bhi03g00906 Tan03g2035 Cmetu04g1284 . Hepe04g1557 . . Cla01g01946 Cam01g2034 . Cco04g1757 Clacu01g2056 Cmu01g1933 Cre04g1607 . . Cone6ag1653 Cone9ag1578 Lsi01g00638 . Chy07g01292 Cme08g00892 Blo05g00812 . . . . Bpe06g00037 . . . . Cmo07g00457 . . . . . . . . . . . . . . . . . . . . Lsi07g01143 Csa06g03288 Chy02g00608 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01143 Lsi_Chr07 FPKM 4.90049 4.673991 9.606523 8.039661 18.968071 19.192463 22.301878 10.595212 9.513472 11.014977