Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01155 ATGTCAGCGGAAACAGAAAGAAGGGAGGAAGAAAACTGGAGGGAATTGGTGAAGAAGATGCTCCCACCTGGAGCATCTCTCCCTGAAAGTGCTAGCGATCTGGATTACTCTATAGCTATGGAGTATGAGGGTCCACCAGTAGTCTATGACGTTCCAAGAGTCGAACCCCTTGACGTACATCCTCATTCAATTCCAGTTGCTGAACCTTTATCTGAATCGCAAAGGTCCATTGCAAATAACGGTCCTCCAACAATTGAACCAATTCCTTTGCCAGTCTCTCGTATTGTTGGTGTCACAAGTTCGCCTACTCAGAGTCCAAGGGTATCAGGAAGTTCAGAGTCTGTAGTATCCGTCTTGCAAAACCATGATTTTTCTTCAGCTTCACCTTCTGCGTCCCCAGCTTCAGTTCACAACCCTCATAGCAATCAACCCAAACAAGTAGTTGTTGATGCAAGAAGAGCACCTGTTGTCACTTTTAATACTGTTGATCACTCCCATCGAAAAGAACTTAGCGTCGAGAACCAAGTGTATCCAGAATATGTAGGAGTTTCAAAAGAGAAAAAGAAAAAGAAAAGTAGGGTGTGTTATAGGTGTGGGAAAGGAAAGTGGGAAACAAAGGAGTCATGTCTAGTTTGTGATGCTAAGTATTGCAGCAATTGTGTGCTTAGGGCTATGGGATCAATGCCTGAAGGGCGTAAATGTGTCACCTGTATTGGTGATCCTATTGACGAATTTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTATCTCGACTACTTAGTCCTTTGGAAGTGAAGCAAATTATGAAGGCAGAAAAAGAATGTCCTGCTAATCAACTTCGCCCAGAACAGCTGATTGTAAATGGACTACCCCTAAGGTCCGAAGAGATGGCAGAATTACTTGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGAAGATATTGGTACGACAAAGAATCTGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAGAATCATTAGTTCAAATTTAAGCTTCACTGGCAAACTTAGCCCCCATGCGAGCAATGGAAACACCGAAGTTTACATCAATGGTCGAGAAATCACTAGACTCGAATTAAGGGTGCTTAAGGTCTTGAAAAGTTCATCAGTGCCTCTCCGACCTAATGGCTTGGAGATCTGTGCCCAACAGAAGCCTCTGAAAGGAGAAATCTTTGGAACTTCCATAATATCGAGGAAGAGGGTGAATTCATCTAATTTCCCTTTAGATGTATACTGGCTTGTGGTTTCTGCTACAACTAGACATATTCAATGCTGTTATTTTTTCAGTTGGCAAACGTACAATGCCCACGTGACACCCATTTTTGGGTCTACGATGACGGTCGCTATGAGGAAGAAGGTCAAAACAATATCAGAGGAAATATTTGGGAGAAGGCAGGCTTCAACACGCTTTGTTTGTGCTTTGTTCTCATTGCCTGTGCCACACGGTCAACCACCTCATGGAGTGAGAGAAGAGGCTAGCAATTATACAACAGTTCCCAACTACTTTGAGCAACAAAAGAGGATTCAGAAACTTCTTCTCATTGGGATTGAAGGCTCTGGAACTAGCACTATCTTTAAGCAGGGAAAGTTTTTGTATGGGAACAGATTTAATGAAGAAGAACTTCAAGACATCAAGTTAATGATTCAGAGTAATATGTACAAGTATCTTAGCATCTTACTCGATGGCCGAGAACGCTTTGAGGAGGAGATCATAAACCGGAAAAAAGCTCCAAGTTCCCAGGGGGATCAAGTTCTTGAAACTGATGGAGAGAAGGAAGCTAGTGAAAGTATATACTCCATCAACCCGAGGTTGAAACATTTTTCCGATTGGCTCCTCGATATCATTGCCACTGGAGATTTGGATGCATTCTTCCCTGCTGCAACTCGTGAGTATGCTCCATTAGTCGAAGAGCTATGGAAGGACCCTGCAATCCAGGAAACTTACAAGAGAAAAAACGAGCTCCACTTTCTTCCTGATGTTTCTGAGTACTTCTTAAGCAGGGCAGTGGAGGTTTCAAGCAACGAATATGAACCTTCTGATCGAGATATCCTGTATGCAGAAGGGGTAACCCAAGGGAATGGATTGGCTTTCATGGAATTTTCCCTTGATGATCGGAGTCCAATGTCTGAGACCTACACCGATAATCTTGAAGCTCCGCCCCCACCTCTCACTAGATATCAACTTATAAGGGTAAGTGCCAAAGGGATGAATGAAGGGTGCAAGTGGGTAGAGATGTTTGAAGATGTTCGAGTCGTTGTCTTTTGTGTTGCTCTTAGTGATTTTGATCAGATGTCCCTCGCCCCAGAAGGTAGCGGCAGCGGAAACCTATTACAAAACAAGATGATGCAGAGCAAGGAGCTTTTTGAGACGATGGTCCGACACCCTTGCTTCAGAAATACCCCATTTGTGTTGATACTCAACAAGTATGATCTCTTTGAAGAGAAAGTAAATCGTGGGTCATTGAATGTTTGCGAATGGTTTAACGATTTCAGCCCTGTGCGACCGCTGCATAGCAACCAGTCACTATCTCATCAAGCTTACTACTATGTAGCTATGAAATTTAAAGACCTTTATCAATCCATCACGGGTCGTAAGCTTTTCGTGTGGCAAGCTAGAGCGAGGGACCGAGTGACTATTGATGAGGCATTCAAGTATATAAGAGAAGTTGTCAAGTGGGACGAGGAGAAAGAGGAGAACTACTATGGTGGACCTGAGGATTCCTTCTATAGCACAGATGTGAGCTCGTCTCCATTTGTTAGACAACAATGA 2799 43.48 MSAETERREEENWRELVKKMLPPGASLPESASDLDYSIAMEYEGPPVVYDVPRVEPLDVHPHSIPVAEPLSESQRSIANNGPPTIEPIPLPVSRIVGVTSSPTQSPRVSGSSESVVSVLQNHDFSSASPSASPASVHNPHSNQPKQVVVDARRAPVVTFNTVDHSHRKELSVENQVYPEYVGVSKEKKKKKSRVCYRCGKGKWETKESCLVCDAKYCSNCVLRAMGSMPEGRKCVTCIGDPIDEFKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRSEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIISSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKVLKSSSVPLRPNGLEICAQQKPLKGEIFGTSIISRKRVNSSNFPLDVYWLVVSATTRHIQCCYFFSWQTYNAHVTPIFGSTMTVAMRKKVKTISEEIFGRRQASTRFVCALFSLPVPHGQPPHGVREEASNYTTVPNYFEQQKRIQKLLLIGIEGSGTSTIFKQGKFLYGNRFNEEELQDIKLMIQSNMYKYLSILLDGRERFEEEIINRKKAPSSQGDQVLETDGEKEASESIYSINPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKNELHFLPDVSEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYTDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAPEGSGSGNLLQNKMMQSKELFETMVRHPCFRNTPFVLILNKYDLFEEKVNRGSLNVCEWFNDFSPVRPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDEEKEENYYGGPEDSFYSTDVSSSPFVRQQ 932
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17011473 17019005 - Lsi07G011550.1 Lsi07g01155 667577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01155 932 Pfam G-protein alpha subunit 515 900 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 PRINTS Alpha G protein (transducin) signature 686 708 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 PRINTS Alpha G protein (transducin) signature 812 821 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 PRINTS Alpha G protein (transducin) signature 520 535 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 PRINTS Alpha G protein (transducin) signature 759 787 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 MobiDBLite consensus disorder prediction 918 932 - -
Lsi07g01155 932 Gene3D - 714 909 IPR027417 -
Lsi07g01155 932 MobiDBLite consensus disorder prediction 69 88 - -
Lsi07g01155 932 MobiDBLite consensus disorder prediction 124 145 - -
Lsi07g01155 932 MobiDBLite consensus disorder prediction 96 115 - -
Lsi07g01155 932 ProSiteProfiles PH domain profile. 1 22 IPR001849 -
Lsi07g01155 932 Gene3D - 547 697 IPR011025 GO:0007165
Lsi07g01155 932 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 26 375 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 475 928 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 905 IPR027417 -
Lsi07g01155 932 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 26 375 - -
Lsi07g01155 932 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 475 928 - -
Lsi07g01155 932 MobiDBLite consensus disorder prediction 124 146 - -
Lsi07g01155 932 CDD G-alpha 519 903 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 SMART galpha_1 460 910 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 SUPERFAMILY Transducin (alpha subunit), insertion domain 546 696 IPR011025 GO:0007165
Lsi07g01155 932 MobiDBLite consensus disorder prediction 909 932 - -
Lsi07g01155 932 ProSiteProfiles G-alpha domain profile. 517 911 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Lsi07g01155 932 SUPERFAMILY FYVE/PHD zinc finger 178 237 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01155 - - - nnu:104607272 933.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00009 Lsi-Chr2:115672 Lsi07g01155 Lsi-Chr7:17011473 2.43E-137 dispersed
Lsi02g00010 Lsi-Chr2:135255 Lsi07g01155 Lsi-Chr7:17011473 1.77E-112 dispersed
Lsi02g01208 Lsi-Chr2:15506319 Lsi07g01155 Lsi-Chr7:17011473 3.60E-07 dispersed
Lsi04g01381 Lsi-Chr4:21614125 Lsi07g01155 Lsi-Chr7:17011473 3.86E-40 dispersed
Lsi07g01155 Lsi-Chr7:17011473 Lsi10g00329 Lsi-Chr10:5239161 1.11E-62 dispersed
Lsi07g01155 Lsi-Chr7:17011473 Lsi01g01019 Lsi-Chr1:8445038 2.74E-75 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01155 Lsi_Chr07 FPKM 5.594203 8.72509 7.145139 4.645756 8.188551 11.622002 8.09311 17.324074 11.540606 12.874819