Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01156 ATGACCGTAGTTGCTTCAGCTCCTGGGAAAGTATTATTGACAGGAGGATACCTGATTTTGGAGAGGCCAAATGCTGGTTTGGTACTCAGTACAAATGCTCGGTTTTATGCAATTGTGAAACCGCTTCACGAGAAAACTGAGCCAAAAAGTGGGAGTGGGTGTTCTTTCTTGACTGAATGTATAAATTCAGAGATGCAGCATGAATGGTTAGATGTGAAGTTGACCTCACCACAGCTTTCTCGAGAAAGTCTGTACAAATTATCGCCCGAGAACTTGATGATTCAGTGCATCTCCTTGAGTGAGTCAAGGAACCCCTTCGTAGAACATGCTGTGCAGTATTCCTTAGCTGCTGCACATGGAATATTTGACAAGGACAAGAAAGATTCACTGCACAGGCTGCTACTACAAGGTCTTGATATCACAGTCTTAGGATGCAATGATTTCTACTCTTATCGGAATCAGATTGAAGCACGTGGACTTCCTTTGACACCAGAATCACTGGTTTCTTTTCCACCATTTGCATCAATTACCTTCAATGCTGAACAATCAAATAGTGAAAATTGCAAGCCTGAAGTTGCAAAGACAGGATTGGGATCATCTGCTGCAATGACAACTGCTGTTGTTGCTGCCCTACTTAATTATCTTGGAGTTGTAAATCTTCCCTCGTCAAGAGGTCAAGAGAAAGAAAATGATACCAAGGATCTTGATATGGTGCATGCAATAGCCCAAACTGCTCACTGTATTGCACAGGGAAAAGTTGGAAGTGGATTTGATGTCAGTTCTGCCTTCACGAAACTCTGTGAACCTTTGTTTCTATGTCCTAAGCACTTGAATTTTGGTTGCAAGATGCTTTATAAGACAATGTACGGTACTCCTCAGTGTACATTGTTAGATGAAAGAGCAGCAGTTAAAGGACCACTAGAAGAAGTCATTGTGGATATCTTAAAAGGAAAGTGGGACCATGAGAGGACTGAGTTTTCCTTGCCTCCATTAATGAATCTTTTATTAGGGGAACCAGGAGCAGGAGGATCATCCACACCATCTATGGTAGGTGCTGTTAAGAAGTGGCAAAAGTCTGACCCTCAGAAATCTCAAGAAGCATGGAGTAAGTTGTTGGAAGCTAATCTCGATCTCGAAAAGCAACTAAATTTACTAAGAAAACTTGCAGCAGAACAATGGGATGTGTATAAATGCATCATAAGTAAATGCAGTACACTTGGATCAAAGAAGTGGATAGAACAAGCCACTGAACCAAGCCAACAAGCAATTGTTAAAGCATTGTTAGGAGCAAGAGATGCCATGCTCGAAATACGAAACTGTATGAAGCAAATGGGCGAAGCTTCAGGTGTTCCAATTGAACCAAAGTCACAAACTGAGCTTTTGGATGCAGCCATGGAATTGGAAGGAGTTTTGTTGGCTGGAGTTCCAGGGGCAGGTGGGTTTGATGCTGTATTTGCTATTACATTGGGTGATTCTAGCAGCCATGTGATTAAGTCATGGACTTCATTCAATGTTCTTGCCCTCTTAGTTAGAGAAGATCCAAATGGAGTTTCTCTTGAAAGTGATGATCCTAGGGGTAAGAGCTGTACAATTACTGTTTAA 1602 41.7 MTVVASAPGKVLLTGGYLILERPNAGLVLSTNARFYAIVKPLHEKTEPKSGSGCSFLTECINSEMQHEWLDVKLTSPQLSRESLYKLSPENLMIQCISLSESRNPFVEHAVQYSLAAAHGIFDKDKKDSLHRLLLQGLDITVLGCNDFYSYRNQIEARGLPLTPESLVSFPPFASITFNAEQSNSENCKPEVAKTGLGSSAAMTTAVVAALLNYLGVVNLPSSRGQEKENDTKDLDMVHAIAQTAHCIAQGKVGSGFDVSSAFTKLCEPLFLCPKHLNFGCKMLYKTMYGTPQCTLLDERAAVKGPLEEVIVDILKGKWDHERTEFSLPPLMNLLLGEPGAGGSSTPSMVGAVKKWQKSDPQKSQEAWSKLLEANLDLEKQLNLLRKLAAEQWDVYKCIISKCSTLGSKKWIEQATEPSQQAIVKALLGARDAMLEIRNCMKQMGEASGVPIEPKSQTELLDAAMELEGVLLAGVPGAGGFDAVFAITLGDSSSHVIKSWTSFNVLALLVREDPNGVSLESDDPRGKSCTITV 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17026221 17037749 - Lsi07G011560.1 Lsi07g01156 667578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01156 533 Pfam GHMP kinases N terminal domain 188 262 IPR006204 GO:0005524
Lsi07g01156 533 Gene3D - 341 509 IPR036554 -
Lsi07g01156 533 PANTHER - 1 527 IPR035102 -
Lsi07g01156 533 TIGRFAM Pmev_kin_ERG8: phosphomevalonate kinase 4 525 IPR016005 GO:0004631
Lsi07g01156 533 Coils Coil 371 391 - -
Lsi07g01156 533 Pfam GHMP kinases C terminal 434 501 IPR013750 -
Lsi07g01156 533 PANTHER PHOSPHOMEVALONATE KINASE, ERG8-RELATED 1 527 - -
Lsi07g01156 533 Gene3D - 1 267 IPR014721 -
Lsi07g01156 533 SUPERFAMILY Ribosomal protein S5 domain 2-like 2 262 IPR020568 -
Lsi07g01156 533 PIRSF PMK_GHMP_euk 1 529 IPR016005 GO:0004631
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01156 K00938 E2.7.4.2, mvaK2; phosphomevalonate kinase [EC:2.7.4.2] - zju:107405752 698.353
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g749 . . . . . . . . Cmo06g00627 . . . . . . . . . . . . . . . Cla10g00123 Cam10g0123 Cec10g0132 Cco10g0132 Clacu10g0128 Cmu10g0975 Cre10g0385 Cone8ag0498 Cone12ag0497 . . Lsi07g01156 . Chy04g00132 . . . Bda07g00072 Bda09g00760 Bpe08g00803 Bpe11g00312 . . Sed02g0043 . Cmo19g00227 Cma06g00619 . Car06g00553 . . Cpe15g00185 Bhi05g00433 Tan07g2028 Cmetu04g1055 Lac11g2456 Hepe06g0983 . Lcy12g1980 Cla09g01084 Cam09g1138 Cec09g1145 Cco09g1163 . . Cre09g1101 . Csa03g04572 . Cme04g00155
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003438 2 1 2 0 2 1 2 2 2 1 1 2 2 1 1 2 2 2 2 2 1 2 2 2 2 1 2 1 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01156 Lsi_Chr07 FPKM 2.461336 3.008846 1.943913 2.402406 6.451949 6.391746 5.909521 0.458171 0.480687 0.464473