Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01157 ATGAAAGGAGACCGGATTCTACTTTCTGAAACCGTGATGGCTGCCAACAAGATTACTGTTACCAACAGATACAAGCACAATCAAATGTATTGGCGGCAAAATCTGATCAGGAGCTCCCTCCACCGCCTCCGCCGCTCTGTGGAAATGAACGGCGAAGATGAGCAGAAGCCAGAGGCTCTGCGTCTCAGAGAACTGGCAGAGAACAAGTTCAGAGATTCCAATCTCAAGTCTGCTCTCAAGTACGCGAAGCGAGCCCACCGCCTCGATCCAAACATTGACGGCGCCGCCGAAATCCTCACTTCCTTCCAGATTCTCCGAGTCGCCGCCGAATCTCCGGACGACTGGTACCGGATTCTTCAGGTGGAGCCTTTTGCTCACATCAACACAATAAAAAAACAGTACAAGAAGCTCGCTCTGCTTCTGCATCCGGATAAGAATCCCTATTCCGGCTCCGAGGAGGCGTTCAAGCTCGTCGGCGAGGCGTTTCGCTTTTTGTCCGACAAGGTTAGGAGGAAGGAGTACGATTTGAAGCTCCGGATTCGGATTCAGGACGAGAAGATTGGAGATGCGGATGTGGAGAGCGAGACGTTTTGGACTGCTTGCTCGACATGCCGGCTTTTGCACCAGTTCGAGAAGAGGTACGTAGGGCATAATTTAGTCTGCCCTAGTTGTAGGAAGAGTTTTAAGGCCGTTGAGGTTGTGTATAATGAACCTGACATTAGGGAAATTGGGGTCATGGTTAGGGGTCGAAGGTTAAGAAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTTGAAGGATTAAAAGAATCTGGCTCGATGCAAAAAGTGAATACTAATCAATCAAAGAGAAATGCTGCAGTGAATAAGACGAATGGTGAGAAGAAGAAAGGTTTGGAGTTAAATGGAAAAGCTGGTTCTGTAGAAGGTGAAGTTAGAAATGGCGATTTGGAGGAGGGAGTTGATAATGATGATGGGATATGTAGAATAAGATTAAGAAGTGGGAGTATGAGGAAGAAGATGAGTAGTGTTGGTGAGGTTTTAGAGAGGTCTAAGCTGAAGTCTGTTAAAATGGAGGAGGAAATGATGACTTTGGCTGAATTACAGTCTCAAGTGATTCAGAAAGCTCGAAAAGAGAAGATGAAACTGAAGTTGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGAAAGAAAGGGCTTGAGGAGAATGGCGACGAAGACGAGAGACTAACTTTGAAAGAGATGGAAGGTCTACTACGGATTCGTCGGCAACGAGCATCAAAGCGTGCTGGGTTTTCGAAGAATGCAAAGCAAAGGAATTCCATGAAGAATGTGAATCTGGAAACTCAGAAGCAAGAACCTTCATGTAATGGTGTTGATTTGGATATGATGGTCGTGGAAGATTCAGATTTTTATGATTTTGACAAGGACAGAATGGAGAGAAGTTTCAAAAAAGGGCAAGTGTGGGCTATATATGATGATGATGATGGAATGCCTAGGCATTATGGTTTAATTGAAGAAGTTACTGTAAATCCTTTTGAAGTGAAAATGAGTTGGTTGGATGTTCAAAATAATGGAGATGAAAGACTACTTTGTTGGGAGAAGATGGGATTTCATGTATCTTGTGGTAGATTTAAGGTGACTAAGAAAACAACCATTCATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAAGGAAGTCTATAGGATTTATCCTAAAAAGGGATCAGTATGGGCACTTTACAAAGAAGAAGAAGAAGGTCTGGATGCTGAGAAGAGAAGAAGCCTTTCGACTAAAGAGAAACGAACTTACGATATCGCGGTGTTTTTAACAACTTACAGTGAGATGCATGGTTTAAGCATGGCTTATCTAGAGAAGGTTGATGGTTACAAGACCATATTCAAGAGAAGAGAGATCGGTTATCATGCTATTAGATGGTTCGAAAAGGATGATATCCGATTGTTTTCGCATCAAATTCCTGCTCGAAAGCTTTCTATAGATGAGGCTCTCGGGCATCTGAAGGACTGTTGGGAACTTGATCCAGCTTCTCTTCCTTCGGATTTGCTAACCACCTGCTGCAACAAATAG 2103 43.46 MKGDRILLSETVMAANKITVTNRYKHNQMYWRQNLIRSSLHRLRRSVEMNGEDEQKPEALRLRELAENKFRDSNLKSALKYAKRAHRLDPNIDGAAEILTSFQILRVAAESPDDWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYSGSEEAFKLVGEAFRFLSDKVRRKEYDLKLRIRIQDEKIGDADVESETFWTACSTCRLLHQFEKRYVGHNLVCPSCRKSFKAVEVVYNEPDIREIGVMVRGRRLRNLSSRQNSGSFEGLKESGSMQKVNTNQSKRNAAVNKTNGEKKKGLELNGKAGSVEGEVRNGDLEEGVDNDDGICRIRLRSGSMRKKMSSVGEVLERSKLKSVKMEEEMMTLAELQSQVIQKARKEKMKLKLEEEEAEERENKRKKGLEENGDEDERLTLKEMEGLLRIRRQRASKRAGFSKNAKQRNSMKNVNLETQKQEPSCNGVDLDMMVVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGDERLLCWEKMGFHVSCGRFKVTKKTTIHSLNIFSHVVDCERAAKEVYRIYPKKGSVWALYKEEEEGLDAEKRRSLSTKEKRTYDIAVFLTTYSEMHGLSMAYLEKVDGYKTIFKRREIGYHAIRWFEKDDIRLFSHQIPARKLSIDEALGHLKDCWELDPASLPSDLLTTCCNK 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17042753 17047677 - Lsi07G011570.1 Lsi07g01157 667579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01157 700 SUPERFAMILY Chaperone J-domain 105 179 IPR036869 -
Lsi07g01157 700 MobiDBLite consensus disorder prediction 258 287 - -
Lsi07g01157 700 MobiDBLite consensus disorder prediction 258 299 - -
Lsi07g01157 700 ProSiteProfiles dnaJ domain profile. 114 178 IPR001623 -
Lsi07g01157 700 Pfam DnaJ domain 114 175 IPR001623 -
Lsi07g01157 700 PANTHER BNAC03G44070D PROTEIN 56 697 - -
Lsi07g01157 700 Pfam Domain of unknown function (DUF3444) 463 670 IPR024593 -
Lsi07g01157 700 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 56 697 - -
Lsi07g01157 700 SMART dnaj_3 113 170 IPR001623 -
Lsi07g01157 700 CDD DnaJ 114 167 IPR001623 -
Lsi07g01157 700 Gene3D DnaJ domain 103 201 IPR036869 -
Lsi07g01157 700 PRINTS DnaJ domain signature 150 170 IPR001623 -
Lsi07g01157 700 PRINTS DnaJ domain signature 134 149 IPR001623 -
Lsi07g01157 700 PRINTS DnaJ domain signature 116 134 IPR001623 -
Lsi07g01157 700 MobiDBLite consensus disorder prediction 383 409 - -
Lsi07g01157 700 Coils Coil 365 403 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01157 - - - bhj:120081605 1170.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01157 Lsi-Chr7:17042753 Lsi09g00032 Lsi-Chr9:305164 3.13E-83 dispersed
Lsi07g01157 Lsi-Chr7:17042753 Lsi09g01390 Lsi-Chr9:21931932 1.58E-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g740 . . . . . . . . Cmo06g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01157 . . Cme06g02437 . . . . . . . . . . . Cma06g00621 . Car06g00555 . . . . . . . . . . . . . . . . . . Csa03g00129 Chy06g02177 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013922 1 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01157 Lsi_Chr07 FPKM 0.524161 0.511898 5.530957 4.839696 91.957497 94.692909 90.999916 0.0 0.0 0.0