Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01159 ATGAGTGGCAGTGAGATGGAGAAACCACCAAAAGACAAGGAGACGAAGACCCCGCCTCCTCCTACTACTACTACCCAGGAGCAGACTACAACCACAAGTGCTGGCACAGTTAATCCTGATTGGTCGGGTTTTCAGGCATATTCTCCTATTCCTCCACATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGGTACATGCACTGCTAGTTTTTTGGAGAATACAATATCCTTCATCAGTAAATTGGCTCTTGCTTCTTTATTTAGTTACCTTTGGAAGGAGTGCTTTGTGTATTTATCTAAATGTGGGTTTTTACTTACAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGTGGCATATATGCTCACCCTTCCATTCCCCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCTTCCCCAAATGGAATCACTGAGGCCTCTGGTAATACGGCATGCAGTTTGGAGGGAGACGTTAAGCCACCTGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCGAAAGGAAGTCTGGGCAGTTTGAACATGATTACAGGGAAGAACAATGAGCTGGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAGAGGTTGTTTAACTTTTCTAGAAATTGCCCATGTAGAATAATAATTGGTGGATGCTTTATTTATTTTATTAGGAAATGA 735 43.67 MSGSEMEKPPKDKETKTPPPPTTTTQEQTTTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAHPYMWGVQVHALLVFWRIQYPSSVNWLLLLYLVTFGRSALCIYLNVGFYLQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTACSLEGDVKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKRLFNFSRNCPCRIIIGGCFIYFIRK 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17052474 17059551 + Lsi07G011590.1 Lsi07g01159 667581

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01159 244 MobiDBLite consensus disorder prediction 1 15 - -
Lsi07g01159 244 MobiDBLite consensus disorder prediction 1 37 - -
Lsi07g01159 244 Pfam G-box binding protein MFMR 3 70 IPR012900 -
Lsi07g01159 244 Pfam G-box binding protein MFMR 113 142 IPR012900 -
Lsi07g01159 244 Pfam Disordered region downstream of MFMR 181 219 - -
Lsi07g01159 244 PANTHER G-BOX-BINDING FACTOR 3-RELATED 112 220 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lsi07g01159 244 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 71 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lsi07g01159 244 MobiDBLite consensus disorder prediction 18 37 - -
Lsi07g01159 244 PANTHER BZIP TRANSCRIPTION FACTOR 16 112 220 - -
Lsi07g01159 244 PANTHER BZIP TRANSCRIPTION FACTOR 16 1 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01159 K09060 GBF; plant G-box-binding factor - csv:101206627 298.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01159 Lsi-Chr7:17052474 Lsi05g02094 Lsi-Chr5:27788450 3.14E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g737 . . . . . . . Bma14g00064 Cmo06g00633 Cmo16g01240 Cma02g01640 . Car02g01399 . . Cpe14g00989 Cpe05g00154 . . . . . . . Cla10g00124 Cam10g0124 Cec10g0134 Cco10g0134 Clacu10g0129 Cmu10g0976 Cre10g0387 Cone8ag0496 Cone12ag0558 . . Lsi07g01159 . Chy04g00130 Cme06g02439 . . . . . . . . . Cmo02g01685 . Cma06g00624 Cma16g01193 Car06g00559 Car16g01124 . . Bhi05g00440 Tan07g2015 . . Hepe06g0987 . . Cla09g01088 . Cec09g1151 Cco09g1167 . . Cre09g1104 . Csa03g04575 Chy06g02175 Cme04g00153
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
Lsi08g01479 CCT,ECH 6 353 bZIP Transcription Factor Family AT1G45249 53.8 7.3e-83 304.7
Lsi07g01159 . 1 219 bZIP Transcription Factor Family AT2G35530 61.4 2.8e-58 223.0
Lsi04g01023 . 10 359 bZIP Transcription Factor Family AT2G40620 54.7 4.0e-80 295.4
Lsi11g01151 . 395 519 bZIP Transcription Factor Family AT2G40620 70.4 6.4e-38 155.2
Lsi10g00496 CCT 1 233 bZIP Transcription Factor Family AT4G35040 63.0 1.5e-65 246.5
Lsi11g01199 CCT 1 232 bZIP Transcription Factor Family AT4G35040 63.4 1.9e-60 229.6
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT5G06950 78.1 1.8e-132 469.2
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT5G06950 76.4 8.9e-132 466.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT5G06950 69.6 9.6e-118 420.2
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT5G06950 67.7 9.6e-110 393.7
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT5G06950 60.8 6.9e-92 334.3
Lsi03g00453 . 100 334 bZIP Transcription Factor Family AT5G06950 51.8 9.5e-57 217.6
Lsi08g00928 . 642 935 bZIP Transcription Factor Family AT1G08320 61.0 1.6e-97 353.2
Lsi03g01716 . 198 514 bZIP Transcription Factor Family AT1G08320 59.0 1.5e-95 346.7
Lsi04g00016 . 97 384 bZIP Transcription Factor Family AT1G08320 60.1 3.4e-92 335.5
Lsi08g00395 . 177 467 bZIP Transcription Factor Family AT1G08320 59.1 3.1e-90 328.9
Lsi03g01615 . 178 470 bZIP Transcription Factor Family AT1G08320 55.3 1.4e-82 303.5
Lsi03g00118 . 165 349 bZIP Transcription Factor Family AT1G08320 52.9 9.9e-68 254.2
Lsi10g01166 . 123 325 bZIP Transcription Factor Family AT1G08320 57.1 1.9e-63 240.0
Lsi10g00496 CCT 1 267 bZIP Transcription Factor Family AT2G16770 59.7 4.5e-67 251.5
Lsi11g01199 CCT 1 263 bZIP Transcription Factor Family AT2G16770 57.6 4.3e-62 235.0
Lsi08g00928 . 637 935 bZIP Transcription Factor Family AT5G06960 79.0 1.2e-122 436.4
Lsi04g00016 . 74 384 bZIP Transcription Factor Family AT5G06960 74.3 1.4e-118 422.9
Lsi08g00395 . 162 467 bZIP Transcription Factor Family AT5G06960 67.6 1.8e-105 379.4
Lsi03g01615 . 156 470 bZIP Transcription Factor Family AT5G06960 64.4 2.3e-97 352.4
Lsi03g01716 . 207 514 bZIP Transcription Factor Family AT5G06960 60.1 3.6e-90 328.6
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT5G06960 50.8 9.5e-59 224.2
Lsi11g01151 . 1 517 bZIP Transcription Factor Family AT4G38900 59.1 3.3e-131 465.7
Lsi11g01149 . 1 536 bZIP Transcription Factor Family AT4G38900 56.4 1.4e-126 450.3
Lsi11g01151 . 64 545 bZIP Transcription Factor Family AT2G21230 53.0 7.0e-99 358.2
Lsi11g01421 . 1 248 bZIP Transcription Factor Family AT2G42380 57.1 3.5e-57 218.8
Lsi08g00928 . 616 935 bZIP Transcription Factor Family AT3G12250 78.8 1.2e-133 473.0
Lsi04g00016 . 54 384 bZIP Transcription Factor Family AT3G12250 75.8 2.9e-130 461.8
Lsi08g00395 . 136 467 bZIP Transcription Factor Family AT3G12250 68.7 1.1e-116 416.8
Lsi03g01615 . 137 470 bZIP Transcription Factor Family AT3G12250 68.4 6.7e-111 397.5
Lsi03g01716 . 221 514 bZIP Transcription Factor Family AT3G12250 60.1 7.7e-91 330.9
Lsi03g00453 . 91 334 bZIP Transcription Factor Family AT3G12250 50.4 6.5e-58 221.5
Lsi08g00395 . 16 467 bZIP Transcription Factor Family AT1G68640 62.3 4.1e-143 505.0
Lsi08g00928 . 606 935 bZIP Transcription Factor Family AT1G68640 64.2 2.2e-112 402.9
Lsi04g00016 . 51 384 bZIP Transcription Factor Family AT1G68640 64.4 3.5e-110 395.6
Lsi03g01615 . 135 470 bZIP Transcription Factor Family AT1G68640 60.5 1.5e-100 363.6
Lsi03g01716 . 209 514 bZIP Transcription Factor Family AT1G68640 55.5 7.0e-87 318.2
Lsi08g00550 . 8 341 bZIP Transcription Factor Family AT1G43700 50.7 1.4e-58 223.8
Lsi05g02094 . 11 416 bZIP Transcription Factor Family AT2G46270 50.6 1.6e-81 300.1
Lsi05g01348 . 42 373 bZIP Transcription Factor Family AT2G31370 70.0 4.4e-109 391.7
Lsi05g01346 . 1 359 bZIP Transcription Factor Family AT2G31370 62.4 2.1e-103 372.9
Lsi04g02035 . 1 250 bZIP Transcription Factor Family AT3G58120 51.6 4.8e-41 165.2
Lsi08g00619 . 17 321 bZIP Transcription Factor Family AT3G56850 56.8 1.2e-71 266.9
Lsi07g01159 . 37 219 bZIP Transcription Factor Family AT1G32150 61.7 7.2e-56 214.9
Lsi05g01348 . 10 368 bZIP Transcription Factor Family AT1G06070 68.5 7.7e-120 427.6
Lsi05g01346 . 1 357 bZIP Transcription Factor Family AT1G06070 68.2 7.7e-120 427.6
Lsi08g00550 . 145 342 bZIP Transcription Factor Family AT1G06070 54.9 3.3e-38 156.4
Lsi11g01151 . 383 527 bZIP Transcription Factor Family AT1G06070 63.9 9.6e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001460 1 5 1 1 1 1 3 2 2 2 2 1 3 2 2 3 1 4 3 2 2 2 2 2 2 1 2 5 12 1 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01159 Lsi_Chr07 FPKM 25.233696 26.364725 32.806259 31.440138 23.955418 27.44627 25.083645 47.955021 43.405724 45.801498