Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01160 ATGGGTTGCATGTTCTCTCAATTGGCTTCAAAATTTGCCTTCTTTCCGCCGTCGCCGGCGACATATCAAATTAGAAAGGGAGAGGGAGAGGGGGAGGGACGGCTGAGGGTAGTATCGACGGCAGCGGGGGCGGCGGTGGAGGACAGTTTGTTGGATGTATTGATGATAGATACGAAACGTGGGAATAAGATAGTGGGATTTTATTTGAGGAATCCTTGTGCGAGACTTACTCTGCTTTATTCCCATGGCAATGCTGCAGACCTTGGCCAACTCTATGACCTTTTTCTTCAGCTTAAAGTTAATCTTAGAGTTAATCTTATGGGATATGACTATTCTGGCTATGGAGCTTCAACTGGTAAGCCTAGCGAATCGAATACATATGCTGATATCGAAGCAGTCTACGAGTGCCTTGAAACTAAGTACGGAGTCGGCCAAGAAGACTTGATCTTGTATGGGCAGTCTGTTGGAAGCGGACCAACGTTGCATTTGGCTTCTAAATTGCCGAGGTTGAGGGGTGTCGTCCTGCATAGCGCTATCCTTTCAGGTCTACGAGTTCTATGCCACGTGAAATTCACCTTTTGCTTCGACATTTATAAGAACATTAACAAAATCAAGAAGGTGAAGTGCCCTGTGCTTGTGATACATGGCACAGAAGATGATGTTGTCAATTGGCTCCATGGAAATGGATTATGGAAAATGTCGAGAGAACCGTATGACCCTCTTTGGATAAAAGGAGGAGGACACTGCAACTTAGAGCTTTATCCCGACTACATCCGCCATCTTTGCAAGTTCATCCAAGAAATGGAGAACATAACCACGAAAATTCGCCTCAAAAAGATTCGACAAACTCTTGAGCTACAAAAAAGATCCTGTTGCTGTGCAGTTTCATGTGATGGATGCTGCTGCAAAGTGAAATGCTGGCGACCAGAATGCTCGAGACCAAGCTGTTCAAGTTGCTGTTGCTCCGTACGGTTGAAATGCCCCGTATCCTCTGCACTAGTTATTTTCAATGGAGATGCAGTGGCTGTTGTAGCAGCTGTTTCCAATGGAGCTGCTGTTGTGAAAGAGGGTCCTCCAATGGTAGCTTATAGAACAAGAGGAAGAAGAATTTCTATACCATTTGGGGCAGATCCCTCTGTTATCAAAGATGGATGTGAAAACTAG 1164 45.19 MGCMFSQLASKFAFFPPSPATYQIRKGEGEGEGRLRVVSTAAGAAVEDSLLDVLMIDTKRGNKIVGFYLRNPCARLTLLYSHGNAADLGQLYDLFLQLKVNLRVNLMGYDYSGYGASTGKPSESNTYADIEAVYECLETKYGVGQEDLILYGQSVGSGPTLHLASKLPRLRGVVLHSAILSGLRVLCHVKFTFCFDIYKNINKIKKVKCPVLVIHGTEDDVVNWLHGNGLWKMSREPYDPLWIKGGGHCNLELYPDYIRHLCKFIQEMENITTKIRLKKIRQTLELQKRSCCCAVSCDGCCCKVKCWRPECSRPSCSSCCCSVRLKCPVSSALVIFNGDAVAVVAAVSNGAAVVKEGPPMVAYRTRGRRISIPFGADPSVIKDGCEN 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17060223 17065057 - Lsi07G011600.1 Lsi07g01160 667582

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01160 387 Gene3D alpha/beta hydrolase 52 263 IPR029058 -
Lsi07g01160 387 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 1 309 - -
Lsi07g01160 387 SUPERFAMILY alpha/beta-Hydrolases 54 270 IPR029058 -
Lsi07g01160 387 PANTHER ALPHA/BETA HYDROLASE DOMAIN-CONTAINING PROTEIN 1 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01160 K01076 ABHD17; abhydrolase domain-containing protein 17 [EC:3.1.2.22] - csv:101206393 590.112
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi06g01040 Lsi-Chr6:20594451 Lsi07g01160 Lsi-Chr7:17060223 8.33E-125 dispersed
Lsi07g01160 Lsi-Chr7:17060223 Lsi08g00920 Lsi-Chr8:17607158 2.47E-96 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g732 . . Bda06g01255 . . Bpe07g00237 . . Cmo06g00634 Cmo16g01239 . . . . . Cpe14g00988 . . . . . . . . Cla10g00125 Cam10g0125 Cec10g0135 Cco10g0135 Clacu10g0130 Cmu10g0977 Cre10g0388 . Cone12ag0559 . . Lsi07g01160 . . Cme06g02440 . . . . . . . Bma12g00238 . . . Cma06g00625 Cma16g01191 Car06g00560 Car16g01123 . . . . . . . . . . . . . . . . . Csa03g00132 Chy06g02174 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007771 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01160 Lsi_Chr07 FPKM 4.033708 3.838603 0.227533 0.540772 0.421516 0.282465 0.105136 0.712154 0.982165 1.015352