Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01171 ATGGCATCGTTCTTTCCGACGGGTAAAGTTCCCTGGTGGGACCGGTCATCCGTTTCTCTCTCCCCCTCTCTCGCCGGTGAATCTCCTTTTCCTCTCGCCGGAAAAGTGCTCGCCGTCTCCGACCACCGTCGTCTTCAGCCTCGGAGATTCTCTCTTTATTGCCGCTTGCGTGTTCTTGTCGCTTTCCTCCGATTCTGCTCCGGAACCTCTGGATCTCTGAATCTGACTGCGCTTGTTCTTGTTCTTCGTCTCTTTCGAGAATGTGGTCCAACTTCTCCTCCTTTCGCTCTCGCGCTTGACTGCTCCTGCTTGTACTGTGATCTAGGGTTTCGGTTTCTGGATTTTCGATTTGTTTTACTATTTTTCCCCCCTGGGTGGTGCTGTTTCGGCGAAGCGAACGAAGACGGAGGCGTCAATCTAATTTTGCATGCATTGGAATGTGGTCAGACGCATTGCCGTCGCTTTCATGTGGTGGAGGGAAGAATTTGTTCATCGAGAGAGGAAAGAAATGGGTTAGCTCTTCTGAAGCTCAAGAGGCTTCAGCCAACAAATTCTGAAACTGCCAACAAAACTTCAGCTGTCAAGAATATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGCCTCAGCTCCTTGTGGTGTGAGATTACTTGGTGGCAATGTTGGGAGCTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTCTTTTCAAAAAGGAAAGTAGACAAGTTTGAATACGATGATTTAGAGTGGACCGAGAAGATTCCAGAATGCCCTGTGTACTCTCCGTCAAAGGAGGAATTTGAGGATCCTTTGGTCTTTTTACAAAAGATAGCTCCTGAAGCGTCAAAATATGTGACTCAGTACGCAGTTGGATACTGGAAGTTATGTCAGGCAGTGCCTTTTGAATTGCCATGTGCATTGAGACTTGAGCAGTTGAGCTTAAATGCTAGATGCAAAGCATATCAAATTTGCATATGCAAGATTGTTTCCCCACTGACTGCTTCTGTTCCTGCTGGGGCTGTATTGATGAAGGAGAAACCAGGGTTCAAGTTTACAACGAGAGTGCAACCTTTTCGTTTTGCTGAATGGGATACTGATGATCAGGTTACCTTTTACATGAGCGGAAGGAACTATACATTTCGCGATTTTGAAAAAATTGCGAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATTTGGAAAAGGAATTTTGGCGTGAAATTGCTTGTGGAAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCCTTTTCATCTTCTCCATCTGATGAGCTTGGGACAAGTAAATGGAATTTGAAGAATCTTTCACGGCTACCGAAGTCCATATTGCGCCTTCTGGAAAACCCAATACCGGGAGTAACGGACCCCATGCTTTATATTGGAATGCTGTTTAGCATGTTCGCTTGGCATGTGGAGGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTGAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTATACACCCGTGATATCTTATCAACTGGTGGAGAGGATGGAGCATTTGACGTTCTTCTGGGGAAAACAACGTTGTTTCCACCAAGTATTTTGTTGGATCATAAGGTGCCTGTATACAGAGCTGTACAGAAACCTGGGGAGTTCGTAATTACCTTCCCCAGAGCATATCATGCTGGATTCAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCCTTGGGAGCTGTCTCCAGCCAGCGGTATGCACTCCTGAACAGGATGCCTTTAATTCCTCATGAAGAGCTTCTATGTAAAGAAGCAATGCTTCTCTACACAAATTCAGAACTTGAAGACCCACGTTATGCTTCTGCAGAGTTAGCCTCTGATTATTCTATTAAGACTTCTTTTGTAAGTATGATTCGCTTCCAGCACCGCGCTCGATGGTCATTGATGAAATCAAGAACGTGCACTGGTGTATCACCAAATCTGCATGGAACCATCCTTTGCTGCTTATGCAAACGTGACTGCTATGTATCTTATATCAACTGCAGTTGTTATGGACATCCAGTGTGTCTTCGTCACGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGTACACTCTTCTTGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAGAAATTCGAGCAGGAATGTGGAATGTTGGATGAGATTCGAGGGCGAACTAATAATGTTGAAGAATTATATTCTTATCCTCTGTTAAATTTATTTAAGCGAGCTGATTCGGAAGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTCACTGCTGCTGCTGCTGCTATTTGTCGCTTGGGAGAAAATGAGTGTGTTTCCAATAGCCAGCCTACACAAAGTTGTATCACTGAAAACCATAGACCTGAACCATCAGATCCTTCTCTCTCTTGTGAAGCGTCAACTCTTTGTTCAGTTGTAGACTATAATGAAACATTGTCCACCACTAGCCATGTACAAAGAAATGCAAGTTTTGAGCAGTCTTCTGAGATTTCTAACCGTGCTCTTGAATCATCACGTAATAATTGCTCAAGTACATCTCTAGGCAGTGTACGTGCATCGGAGCTGACTCTAGTAGATCGAGAAAGTGATGATTCCGATACAGAAATTTTTAGGGTCAAGCGTCGCCCTCTGAAGCTGGATAAAAAGACTGGGAGTGATGCCACATCTTTAAAGCATTTTGCTGGCCAGGATGGCCGCAAAAGACTGAAGAGAATCCAAACAAATGGGAACTCAGAGCAACTAACACCATCGGATTGCCGTGGAACTGACAAATCACGCTATAAATTCTACCCTTCTACTGCTCTTAAGGACTCTGCAGAAAGTGATGCAATTGACAAGTGTAGCAGAGGAAGTATCAAGTGCCAGAGATTCAGCAATGAGAAACTAATGAATAGACAGCGCGTCTATGAACTCAACAACCGCAGGAGGGAAAGGTTTCAGCATGAGATGGGAAAGCCCAAAAGGGTTCATCCACATCCCTCTGTGGAGATTAGGTCTAAGCGTCTCAAAATTCGAGGCCCAACATTCTGTGGGCCCAATACCAGATCAGATTGA 3192 44.08 MASFFPTGKVPWWDRSSVSLSPSLAGESPFPLAGKVLAVSDHRRLQPRRFSLYCRLRVLVAFLRFCSGTSGSLNLTALVLVLRLFRECGPTSPPFALALDCSCLYCDLGFRFLDFRFVLLFFPPGWCCFGEANEDGGVNLILHALECGQTHCRRFHVVEGRICSSREERNGLALLKLKRLQPTNSETANKTSAVKNMMNRSGGDALRASAPCGVRLLGGNVGSFSRSSGMSNERDVFSKRKVDKFEYDDLEWTEKIPECPVYSPSKEEFEDPLVFLQKIAPEASKYVTQYAVGYWKLCQAVPFELPCALRLEQLSLNARCKAYQICICKIVSPLTASVPAGAVLMKEKPGFKFTTRVQPFRFAEWDTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYLEKEFWREIACGKTESVEYACDVDGSAFSSSPSDELGTSKWNLKNLSRLPKSILRLLENPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGEAALQFENVVREHVYTRDILSTGGEDGAFDVLLGKTTLFPPSILLDHKVPVYRAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVSSQRYALLNRMPLIPHEELLCKEAMLLYTNSELEDPRYASAELASDYSIKTSFVSMIRFQHRARWSLMKSRTCTGVSPNLHGTILCCLCKRDCYVSYINCSCYGHPVCLRHDIKSLNFSCGSNRTLFLCEDILEMESAAQKFEQECGMLDEIRGRTNNVEELYSYPLLNLFKRADSEGYTPYCKIEVQLNSEFTAAAAAICRLGENECVSNSQPTQSCITENHRPEPSDPSLSCEASTLCSVVDYNETLSTTSHVQRNASFEQSSEISNRALESSRNNCSSTSLGSVRASELTLVDRESDDSDTEIFRVKRRPLKLDKKTGSDATSLKHFAGQDGRKRLKRIQTNGNSEQLTPSDCRGTDKSRYKFYPSTALKDSAESDAIDKCSRGSIKCQRFSNEKLMNRQRVYELNNRRRERFQHEMGKPKRVHPHPSVEIRSKRLKIRGPTFCGPNTRSD 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17195329 17208807 - Lsi07G011710.1 Lsi07g01171 667593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01171 1063 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 322 1056 - -
Lsi07g01171 1063 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 186 286 - -
Lsi07g01171 1063 MobiDBLite consensus disorder prediction 1025 1063 - -
Lsi07g01171 1063 PANTHER LYSINE-SPECIFIC DEMETHYLASE 322 1056 - -
Lsi07g01171 1063 ProSiteProfiles JmjC domain profile. 445 615 IPR003347 -
Lsi07g01171 1063 SMART cupin_9 445 615 IPR003347 -
Lsi07g01171 1063 MobiDBLite consensus disorder prediction 926 952 - -
Lsi07g01171 1063 Pfam JmjC domain, hydroxylase 475 598 IPR003347 -
Lsi07g01171 1063 PANTHER LYSINE-SPECIFIC DEMETHYLASE 186 286 - -
Lsi07g01171 1063 SMART JmjN_1 258 289 IPR003349 -
Lsi07g01171 1063 SUPERFAMILY Clavaminate synthase-like 376 631 - -
Lsi07g01171 1063 MobiDBLite consensus disorder prediction 926 971 - -
Lsi07g01171 1063 Pfam C5HC2 zinc finger 695 746 IPR004198 -
Lsi07g01171 1063 Gene3D Cupin 252 620 - -
Lsi07g01171 1063 Pfam jmjN domain 260 286 IPR003349 -
Lsi07g01171 1063 MobiDBLite consensus disorder prediction 1025 1049 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01171 - - - csv:101211852 1602.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi07g01171 Lsi-Chr7:17195329 Lsi09g00264 Lsi-Chr9:2758258 5.05E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g719 . . . . . . . . . Cmo16g01231 . . . . . Cpe14g00981 . . . . . . . . . . . . . . . Cone8ag0485 . . . Lsi07g01171 . . Cme06g02447 . Blo19g00246 . . Bpe08g00806 . . . . . . . Cma16g01181 . Car16g01115 . . . . . . . . . . . . . . . . . Csa03g00140 Chy06g02167 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
25671 PF02373 JmjC 7.80E-40 CL0029 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01171 Lsi_Chr07 FPKM 29.80332 31.800339 24.478043 26.187099 75.22525 73.138161 56.520996 31.057243 32.381859 31.671171