Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi07g01175 ATGTCGATTAAGACTGTCAAAGTCAGCAATGTCTCCCTGGGAGCGTCTGAACGAGATATCAAGGAGTTTTTTTCCTTCTCGGGTGACATTGAATATCTTGAAATGCAGAGTGAAAGTGAGCGGTCTCAAATTGCTTATGTAACCTTTAAGGACACGCAAGGAGCAGAGACTGCCGTTCTTTTGTCCGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGATTATGAGCTCCCTCCTGAAGCTACCGCACCACCCCCTGCCCCTGGAACTAAAGCACCTGGTGCTGCTGAATCTGCCTTTCGGAAAGCAGAGGATGTGGTTAGTGGCATGCTAGCCAAGGGCTTTATCTTGGGTAAAGATGCACTCAACTCGGCAAAGGCATTTGATGAGAAACACCAGTTATCTTCCACGGCTTCAGCTAAAGTTGCTACATTGGATAAAAAAATTGGATTCACTGAGAAAATTAGTGCTGGTACATCGTTGATGAGCGACAAAGTTCGGGAAGTAGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCGGAAGAAAAAGTTAGCAATGCTGGATCTGCCATTATGAAAAACCGATATGTAATGAGCGGGACTAGCTGGGTTACTGATGCTTTCAATAAGGTAGCCAAGGCAGCTGGAGAAGTTGGTCAGAAAACAAAAGAGAAAGTCGTGGTGTCGGAAGAAGAACAGAAAAAGAAGACGGTTGAAGATTTTGCTAAGGTTCATCTTTCAGAATCCCCAAAAGCAGCATCAGCGCCCCCTGAGGAGCCTCAACAACGTCCCAAGCCCGAACCAGCTCAAGAGAGTATATGGTGCTCTAAGCATTGGCATCGGTGTCAGTCTCTCTCTATAAGAAGAAAAAAAATCAACGGCCACAATGATTCTCCTACATCCATCGGTGATTTTAGCGAACAGAGCGAATTGCAGAGAGAAGGACAAGAAAGTTCTAGAGAGAGAAAAATGGTGCTATGGGAAATCACTCTAGGAACCGCCTATTTCTTGGGGCTCAAGCGAACTTATCGCCTCGCCCTCAAGCTTCAACGTCGCATCGTTAGCCCAAAGCTTCCCAAGATCCGTCAGTTTCTTCATCGACGTACCCGTGCTGTATTTGATGTAGCATTAAAGGTTCACTTGAACATACAGCAGAGAGACCTAGAAGTTGGTCGGAATCTTGGTAACTGGATTCTACGATTGCTCGACAGATATAAACCATCAGCTCAAATTCGTAAACAGGACGGTGGATCGATGACGAATGCAACAAAACAGATTTCCAGCTCCTCCTTGAAAATTCCAGAGGGCTCCCGGATCCTGAAGAAGCCAAACTCTTCCAGACAACTATTTACCTCATCAACAAATATATGGCCTAAGCAATTTCCTACAATTTCCATGATGATGAAGTCTCCAAAGCCAGCCACAAGTATGATCCAGCATAGACATTTTGGCATTTTGACGCCTGCAGCATCGGGGCCGATATATGTAAGAGGATGGCATAGTGGAGTCATTAGGGAGGATATAAGGCAATGGATGTTGCAAAACTAG 1578 45.18 MSIKTVKVSNVSLGASERDIKEFFSFSGDIEYLEMQSESERSQIAYVTFKDTQGAETAVLLSGATIVDLSVNITLCPDYELPPEATAPPPAPGTKAPGAAESAFRKAEDVVSGMLAKGFILGKDALNSAKAFDEKHQLSSTASAKVATLDKKIGFTEKISAGTSLMSDKVREVDQKFQVSEKTKSAFAVAEEKVSNAGSAIMKNRYVMSGTSWVTDAFNKVAKAAGEVGQKTKEKVVVSEEEQKKKTVEDFAKVHLSESPKAASAPPEEPQQRPKPEPAQESIWCSKHWHRCQSLSIRRKKINGHNDSPTSIGDFSEQSELQREGQESSRERKMVLWEITLGTAYFLGLKRTYRLALKLQRRIVSPKLPKIRQFLHRRTRAVFDVALKVHLNIQQRDLEVGRNLGNWILRLLDRYKPSAQIRKQDGGSMTNATKQISSSSLKIPEGSRILKKPNSSRQLFTSSTNIWPKQFPTISMMMKSPKPATSMIQHRHFGILTPAASGPIYVRGWHSGVIREDIRQWMLQN 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17263369 17270547 - Lsi07G011750.1 Lsi07g01175 667597

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi07g01175 525 Gene3D - 2 74 IPR012677 -
Lsi07g01175 525 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 264 - -
Lsi07g01175 525 PANTHER BINDING PARTNER OF ACD11 1 1 264 - -
Lsi07g01175 525 SUPERFAMILY RNA-binding domain, RBD 3 78 IPR035979 GO:0003676
Lsi07g01175 525 MobiDBLite consensus disorder prediction 300 327 - -
Lsi07g01175 525 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Lsi07g01175 525 CDD RRM_Vip1_like 6 74 IPR034360 -
Lsi07g01175 525 MobiDBLite consensus disorder prediction 257 282 - -
Lsi07g01175 525 SMART rrm1_1 5 74 IPR000504 GO:0003723
Lsi07g01175 525 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi07g01175 - - - csv:101207930 460.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi04g00992 Lsi-Chr4:10845808 Lsi07g01175 Lsi-Chr7:17263369 7.66E-70 dispersed
Lsi07g01175 Lsi-Chr7:17263369 Lsi10g00258 Lsi-Chr10:4191090 8.08E-98 dispersed
Lsi07g01175 Lsi-Chr7:17263369 Lsi04g00441 Lsi-Chr4:4227822 4.62E-44 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi07g01175 Lsi_Chr07 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.302689 0.192238